Package: t-coffee (8.84-1)

[ Source: t-coffee  ]

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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Download t-coffee

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	792.5 kB	1,844.0 kB	[list of files]
armel	724.1 kB	1,684.0 kB	[list of files]
i386	708.2 kB	1,736.0 kB	[list of files]
ia64	1,192.8 kB	3,568.0 kB	[list of files]
kfreebsd-amd64	793.3 kB	1,838.0 kB	[list of files]
kfreebsd-i386	707.4 kB	1,726.0 kB	[list of files]
mips	815.5 kB	2,228.0 kB	[list of files]
mipsel	819.0 kB	2,228.0 kB	[list of files]
powerpc	797.3 kB	1,892.0 kB	[list of files]
s390	766.6 kB	1,828.0 kB	[list of files]
sparc	728.7 kB	1,740.0 kB	[list of files]