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Package: shogun-python-modular (0.9.1-1 and others)

Large Scale Machine Learning Toolbox

SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing.

SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the modular Python package employing swig.

Tags: Biology: Nucleic Acids, Software Development: Python Development, Libraries, Field: Biology, Bioinformatics, Mathematics, Statistics, Implemented in: C++, Python, Role: Development Library, Purpose: Analysing, Learning

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Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 0.9.1-1 2,545.3 kB11860 kB [list of files]
armel 0.9.1-1 2,299.8 kB10960 kB [list of files]
hppa 0.9.1-1 2,642.1 kB15880 kB [list of files]
i386 0.9.1-1 2,423.3 kB11428 kB [list of files]
ia64 0.9.1-1 2,925.6 kB19484 kB [list of files]
mips 0.9.1-1 1,874.6 kB13916 kB [list of files]
mipsel 0.9.1-1 1,826.4 kB13916 kB [list of files]
powerpc 0.9.1-1+b1 2,469.1 kB12016 kB [list of files]
s390 0.9.1-1 2,099.5 kB11996 kB [list of files]
sparc 0.9.1-1 2,381.1 kB11780 kB [list of files]