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[ Source: seaview  ]

Package: seaview (1:3.2-1)

Multiple sequence alignment editor

SeaView is a graphical multiple sequence alignment editor developed by Manolo Gouy. Multiple alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE) are supported for reading and writing. Alignments can be manually edited. The user is further supported by an integration of external programs, i.e., to run DOT-PLOT or MUSCLE, to locally improve the alignment.

When using SeaView for investigations that lead to a publication, please cite the following reference:

Galtier, N., Gouy, M. and Gautier, C. (1996) "SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny." Comput. Applic. Biosci. 12:543-548.

Tags: Field: Biology, Bioinformatics, Implemented in: C, C++, User Interface: X Window System, Networking: Client, Role: Program, Scope: Utility, Interface Toolkit: FLTK, Purpose: Comparing, Editing, Printing, Data Visualization, Supports Format: Plain Text, X Window System: Application

Other Packages Related to seaview

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [not ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libgcc1 (>= 1:4.1.1) [not armel, hppa]
    GCC support library
    dep: libgcc1 (>= 1:4.3) [armel]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support library
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1) [not armel]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.3) [armel]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: xterm
    X terminal emulator
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    Multiple alignment program of protein sequences

Download seaview

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 184.3 kB500 kB [list of files]
armel 170.3 kB464 kB [list of files]
hppa 196.2 kB508 kB [list of files]
i386 174.5 kB484 kB [list of files]
ia64 261.8 kB768 kB [list of files]
mips 190.2 kB576 kB [list of files]
mipsel 190.1 kB576 kB [list of files]
powerpc 193.3 kB524 kB [list of files]
s390 183.7 kB492 kB [list of files]
sparc 172.8 kB476 kB [list of files]