Package: seaview (1:4.2.5-1) [non-free]

[ Source: seaview  ]

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Tags: Field: Biology, Bioinformatics, Implemented in: C, C++, User Interface: X Window System, Networking: Client, Role: Program, Scope: Utility, Interface Toolkit: FLTK, Purpose: Comparing, Editing, Printing, Data Visualization, Supports Format: Plain Text, X Window System: Application

Other Packages Related to seaview

• dep: libc6 (>= 2.7)

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libfltk1.1 (>= 1.1.6)

  Fast Light Toolkit - shared libraries

• dep: libfontconfig1 (>= 2.8.0)

  generic font configuration library - runtime

• dep: libgcc1 (>= 1:4.1.1)

  GCC support library

• dep: libjpeg62

  The Independent JPEG Group's JPEG runtime library (version 6.2)

• dep: libpng12-0 (>= 1.2.13-4)

  PNG library - runtime

• dep: libstdc++6 (>= 4.1.1)

  The GNU Standard C++ Library v3

• dep: libx11-6

  X11 client-side library

• dep: libxext6

  X11 miscellaneous extension library

• dep: libxft2 (>> 2.1.1)

  FreeType-based font drawing library for X

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: clustalw

  global multiple nucleotide or peptide sequence alignment

• rec: muscle

  Multiple alignment program of protein sequences

• rec: phyml

  Phylogenetic estimation using Maximum Likelihood

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Architecture	Package Size	Installed Size	Files
amd64	269.9 kB	684.0 kB	[list of files]
i386	253.4 kB	656.0 kB	[list of files]