Package: proda (1.0-7)

Links for proda

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Download Source Package proda:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
David Paleino (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [proda.stanford.edu]

Similar packages:

multiple alignment of protein sequences

ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.

ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.

Tags: Biology: biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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Architecture	Package Size	Installed Size	Files
amd64	66.6 kB	196 kB	[list of files]
armel	64.5 kB	184 kB	[list of files]
hppa	73.1 kB	208 kB	[list of files]
i386	62.0 kB	144 kB	[list of files]
ia64	99.3 kB	376 kB	[list of files]
mips	70.0 kB	248 kB	[list of files]
mipsel	70.2 kB	248 kB	[list of files]
powerpc	71.3 kB	208 kB	[list of files]
s390	62.4 kB	188 kB	[list of files]
sparc	63.2 kB	192 kB	[list of files]