Package: proda (1.0-7)

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Download Source Package proda:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
David Paleino (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [proda.stanford.edu]

Similar packages:

multiple alignment of protein sequences

ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.

ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.

Tags: Biology: biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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Architecture	Package Size	Installed Size	Files
amd64	66.6 kB	196.0 kB	[list of files]
armel	64.5 kB	184.0 kB	[list of files]
i386	62.0 kB	144.0 kB	[list of files]
ia64	99.3 kB	376.0 kB	[list of files]
kfreebsd-amd64	66.6 kB	168.0 kB	[list of files]
kfreebsd-i386	61.7 kB	158.0 kB	[list of files]
mips	70.0 kB	248.0 kB	[list of files]
mipsel	70.2 kB	248.0 kB	[list of files]
powerpc	71.3 kB	208.0 kB	[list of files]
s390	62.4 kB	188.0 kB	[list of files]
sparc	63.2 kB	192.0 kB	[list of files]