Package: mummer (3.22~dfsg-2)

[ Source: mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

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• dep: libc6 (>= 2.7) [not ia64, kfreebsd-amd64, kfreebsd-i386]

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Architecture	Package Size	Installed Size	Files
amd64	435.7 kB	1,244.0 kB	[list of files]
armel	431.4 kB	1,192.0 kB	[list of files]
i386	413.4 kB	1,156.0 kB	[list of files]
ia64	654.3 kB	2,124.0 kB	[list of files]
kfreebsd-amd64	432.4 kB	1,146.0 kB	[list of files]
kfreebsd-i386	410.3 kB	1,038.0 kB	[list of files]
mips	461.6 kB	1,420.0 kB	[list of files]
mipsel	457.5 kB	1,424.0 kB	[list of files]
powerpc	459.7 kB	1,264.0 kB	[list of files]
s390	426.5 kB	1,180.0 kB	[list of files]
sparc	431.7 kB	1,204.0 kB	[list of files]