Download Source Package libtfbs-perl:
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
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| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 194.9 kB | 748 kB | [list of files] |
| armel | 196.5 kB | 748 kB | [list of files] |
| hppa | 194.4 kB | 748 kB | [list of files] |
| i386 | 196.4 kB | 744 kB | [list of files] |
| ia64 | 195.7 kB | 760 kB | [list of files] |
| mips | 194.4 kB | 748 kB | [list of files] |
| mipsel | 192.1 kB | 748 kB | [list of files] |
| powerpc | 196.3 kB | 752 kB | [list of files] |
| s390 | 192.6 kB | 748 kB | [list of files] |
| sparc | 192.8 kB | 744 kB | [list of files] |