Package: hmmer-pvm (2.3.2-5)

Links for hmmer-pvm

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

HMMER programs with PVM (Parallel Virtual Machine) support

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

This package contains HMMER programs compiled with PVM support.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer-pvm

depends

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dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc6 (>= 2.7-1) [not ia64, kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libc6.1 (>= 2.7-1) [ia64]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libpvm3

Parallel Virtual Machine - shared libraries
dep: pvm

Parallel Virtual Machine - binaries

sug: hmmer-doc (>= 2.3.2-5)

profile hidden Markov models for protein sequence analysis (docs)

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Architecture	Package Size	Installed Size	Files
amd64	379.3 kB	836.0 kB	[list of files]
armel	357.4 kB	748.0 kB	[list of files]
i386	342.5 kB	744.0 kB	[list of files]
ia64	616.0 kB	1,748.0 kB	[list of files]
kfreebsd-amd64	379.1 kB	858.0 kB	[list of files]
kfreebsd-i386	340.3 kB	746.0 kB	[list of files]
mips	390.2 kB	1,004.0 kB	[list of files]
mipsel	392.2 kB	1,004.0 kB	[list of files]
powerpc	387.3 kB	848.0 kB	[list of files]
s390	363.5 kB	784.0 kB	[list of files]
sparc	340.3 kB	756.0 kB	[list of files]