Package: hmmer (2.3.2-5)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

depends

recommends

suggests

dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc6 (>= 2.7-1) [not ia64, kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libc6.1 (>= 2.7-1) [ia64]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libpvm3

Parallel Virtual Machine - shared libraries

rec: biosquid

utilities for biological sequence analysis

sug: hmmer-doc (>= 2.3.2-5)

profile hidden Markov models for protein sequence analysis (docs)
sug: hmmer-pvm (>= 2.3.2-5)

HMMER programs with PVM (Parallel Virtual Machine) support

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Architecture	Package Size	Installed Size	Files
amd64	1,191.2 kB	2,512.0 kB	[list of files]
armel	1,120.2 kB	2,280.0 kB	[list of files]
i386	1,075.6 kB	2,264.0 kB	[list of files]
ia64	1,916.9 kB	5,340.0 kB	[list of files]
kfreebsd-amd64	1,190.1 kB	2,618.0 kB	[list of files]
kfreebsd-i386	1,069.7 kB	2,362.0 kB	[list of files]
mips	1,225.8 kB	3,052.0 kB	[list of files]
mipsel	1,230.7 kB	3,052.0 kB	[list of files]
powerpc	1,214.9 kB	2,588.0 kB	[list of files]
s390	1,139.9 kB	2,368.0 kB	[list of files]
sparc	1,069.2 kB	2,272.0 kB	[list of files]