Package: clustalw (2.0.12-1) [non-free]

[ Source: clustalw  ]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to clustalw

• dep: libc6 (>= 2.1.3) [i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.2) [mips, mipsel]

  dep: libc6 (>= 2.2.5) [amd64]

  dep: libc6 (>= 2.4) [armel, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.2) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.1.1) [not armel]

  GCC support library

  dep: libgcc1 (>= 1:4.4.0) [armel]

• dep: libstdc++6 (>= 4.2.1) [not armel, mips, mipsel, powerpc]

  The GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.4.0) [armel, mips, mipsel, powerpc]

• dep: libunwind7 [ia64]

  A library to determine the call-chain of a program - runtime

• sug: clustalx

  GUI for Clustal W

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

Download clustalw

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	332.7 kB	880.0 kB	[list of files]
armel	320.4 kB	804.0 kB	[list of files]
i386	318.4 kB	852.0 kB	[list of files]
ia64	464.1 kB	1,532.0 kB	[list of files]
mips	343.5 kB	1,108.0 kB	[list of files]
mipsel	343.5 kB	1,108.0 kB	[list of files]
powerpc	350.5 kB	892.0 kB	[list of files]
s390	318.9 kB	832.0 kB	[list of files]
sparc	351.2 kB	948.0 kB	[list of files]