Package: boxshade (3.3.1-4)

Links for boxshade

Debian Resources:

Download Source Package boxshade:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Charles Plessy (QA Page)
David Paleino (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [www.ch.embnet.org]

Similar packages:

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

Other Packages Related to boxshade

depends

recommends

suggests

dep: libc6 (>= 2.7-1) [not ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libc6.1 (>= 2.7-1) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

sug: kalign

Global and progressive multiple sequence alignment

or clustalw

global multiple nucleotide or peptide sequence alignment

or mafft

Multiple alignment program for amino acid or nucleotide sequences

or hmmer

profile hidden Markov models for protein sequence analysis
sug: seaview

Multiple sequence alignment editor
sug: texlive-latex-extra

TeX Live: LaTeX supplementary packages
sug: xfig

Facility for Interactive Generation of figures under X11

Download boxshade

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	51.8 kB	244 kB	[list of files]
armel	52.7 kB	244 kB	[list of files]
hppa	53.7 kB	252 kB	[list of files]
i386	45.8 kB	172 kB	[list of files]
ia64	66.7 kB	336 kB	[list of files]
mips	52.3 kB	280 kB	[list of files]
mipsel	52.4 kB	280 kB	[list of files]
powerpc	51.1 kB	248 kB	[list of files]
s390	53.0 kB	248 kB	[list of files]
sparc	49.2 kB	240 kB	[list of files]