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[ Source: bioperl-run  ]

Package: bioperl-run (1.6.1-1)

Wrapper modules for BioPerl

Contains modules that provide a Perl interface to various bioinformatics applications to allow them to be used with common BioPerl objects.

Not all the wrappable applications are packaged in Debian. The ones that are are "Suggested" by this package.

Other Packages Related to bioperl-run

  • depends
  • recommends
  • suggests
  • dep: bioperl (>= 1.6.0)
    Perl tools for computational molecular biology
  • sug: amap-align
    Protein multiple alignment by sequence annealing
  • sug: blast2
    Basic Local Alignment Search Tool
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: emboss
    the european molecular biology open software suite
  • sug: exonerate
    generic tool for pairwise sequence comparison
  • sug: hmmer
    profile hidden Markov models for protein sequence analysis
  • sug: molphy
    Program Package for MOLecular PHYlogenetics
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: sim4
    tool for aligning cDNA and genomic DNA
  • sug: t-coffee
    Multiple Sequence Alignment
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

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