Balík: ncbi-epcr (2.3.10-1)

[ Zdroj: epcr  ]

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

Značky: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Checking, Searching, Supports Format: Plain Text

Ostatné balíky súvisiace s balíkom ncbi-epcr

• dep: libc6 (>= 2.7-1) [nie alpha, ia64]

  GNU C Library: Shared libraries
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  tiež virtuálny balík poskytovaný balíkom libc6.1-udeb

• dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, ia64]

  podporná knižnica GCC

  dep: libgcc1 (>= 1:4.2.1-4) [mips, mipsel, powerpc, s390, sparc]

  dep: libgcc1 (>= 1:4.3) [arm, armel]

• dep: libgcc4 (>= 4.1.1-21) [hppa]

  podporná knižnica GCC

• dep: libstdc++6 (>= 4.2.1-4) [nie armel]

  Štandardná C++ knižnica GNU v3

  dep: libstdc++6 (>= 4.3) [armel]

• dep: libunwind7 (>= 0.98.5-6) [ia64]

  knižnica na určenie postupnosti volania programu - dynamická verzia

• sug: bioperl

  Perl tools for computational molecular biology

Stiahnuť ncbi-epcr

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
alpha	211.0 kB	640.0 kB	[zoznam súborov]
amd64	195.2 kB	520.0 kB	[zoznam súborov]
arm	219.1 kB	548.0 kB	[zoznam súborov]
armel	183.8 kB	472.0 kB	[zoznam súborov]
hppa	231.9 kB	584.0 kB	[zoznam súborov]
i386	188.5 kB	476.0 kB	[zoznam súborov]
ia64	268.8 kB	892.0 kB	[zoznam súborov]
mips	209.7 kB	692.0 kB	[zoznam súborov]
mipsel	209.8 kB	692.0 kB	[zoznam súborov]
powerpc	204.6 kB	544.0 kB	[zoznam súborov]
s390	192.1 kB	504.0 kB	[zoznam súborov]
sparc	196.9 kB	528.0 kB	[zoznam súborov]