[  etch  ] [  etch-m68k  ] [  lenny  ] [  squeeze  ] [  sid  ]
[ Zdroj: epcr  ]

Balík: ncbi-epcr (2.3.10-1)

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

Značky: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Checking, Searching, Supports Format: Plain Text

Ostatné balíky súvisiace s balíkom ncbi-epcr

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.7-1) [nie alpha, ia64]
    knižnica GNU C - zdieľané knižnice
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    knižnica GNU C - zdieľané knižnice
    tiež virtuálny balík poskytovaný balíkom libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, ia64]
    podporná knižnica GCC
    dep: libgcc1 (>= 1:4.2.1-4) [mips, mipsel, powerpc, s390, sparc]
    dep: libgcc1 (>= 1:4.3) [arm, armel]
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    podporná knižnica GCC
  • dep: libstdc++6 (>= 4.2.1-4) [nie armel]
    Štandardná C++ knižnica GNU v3
    dep: libstdc++6 (>= 4.3) [armel]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    knižnica na určenie postupnosti volania programu - dynamická verzia
  • sug: bioperl
    Perl tools for computational molecular biology

Stiahnuť ncbi-epcr

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
alpha 211.0 kB640 kB [zoznam súborov]
amd64 195.2 kB520 kB [zoznam súborov]
arm 219.1 kB548 kB [zoznam súborov]
armel 183.8 kB472 kB [zoznam súborov]
hppa 231.9 kB584 kB [zoznam súborov]
i386 188.5 kB476 kB [zoznam súborov]
ia64 268.8 kB892 kB [zoznam súborov]
mips 209.7 kB692 kB [zoznam súborov]
mipsel 209.8 kB692 kB [zoznam súborov]
powerpc 204.6 kB544 kB [zoznam súborov]
s390 192.1 kB504 kB [zoznam súborov]
sparc 196.9 kB528 kB [zoznam súborov]