Balík: kraken (1.1.1-2)

[ Zdroj: kraken  ]

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

Ostatné balíky súvisiace s balíkom kraken

• dep: jellyfish1

  count k-mers in DNA sequences

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [nie amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf, i386]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 6)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

Stiahnuť kraken

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	736.7 kB	1,532.0 kB	[zoznam súborov]
arm64	730.6 kB	1,492.0 kB	[zoznam súborov]
armel	728.6 kB	1,462.0 kB	[zoznam súborov]
armhf	729.8 kB	1,418.0 kB	[zoznam súborov]
i386	743.1 kB	1,542.0 kB	[zoznam súborov]
mips64el	737.3 kB	1,558.0 kB	[zoznam súborov]
ppc64el	736.7 kB	1,772.0 kB	[zoznam súborov]
s390x	730.5 kB	1,508.0 kB	[zoznam súborov]