Balík: libwfa2-dev (2.3.3-1)

[ Zdroj: libwfa2  ]

exact gap-affine algorithm (development)

The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process. Unlike to traditional dynamic programming algorithms that run in quadratic time, the WFA runs in time O(ns+s^2), proportional to the sequence length n and the alignment score s, using O(s^2) memory (or O(s) using the ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple computational patterns that the modern compilers can automatically vectorize for different architectures without adapting the code. To intuitively illustrate why the WFA algorithm is so interesting, look at the following figure. The left panel shows the cells computed by a classical dynamic programming based algorithm (like Smith-Waterman or Needleman Wunsch). In contrast, the right panel shows the cells computed by the WFA algorithm to obtain the same result (i.e., the optimal alignment).

This package contains the static library and the header files.

Značky: Software Development: Knižnice, Role: Vývojová knižnica

Ostatné balíky súvisiace s balíkom libwfa2-dev

• dep: libwfa2-0 (= 2.3.3-1)

  exact gap-affine algorithm (shared library)

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Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	76.6 kB	446.0 kB	[zoznam súborov]
arm64	71.9 kB	439.0 kB	[zoznam súborov]
armel	68.1 kB	374.0 kB	[zoznam súborov]
armhf	67.6 kB	349.0 kB	[zoznam súborov]
i386	85.0 kB	436.0 kB	[zoznam súborov]
mips64el	80.0 kB	528.0 kB	[zoznam súborov]
mipsel	82.3 kB	443.0 kB	[zoznam súborov]
ppc64el	84.8 kB	504.0 kB	[zoznam súborov]
s390x	74.3 kB	455.0 kB	[zoznam súborov]