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Package: tree-puzzle (5.2-6 and others)

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to tree-puzzle

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.3.2.ds1-4) [hurd-i386]
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.3) [hppa, mips, mipsel]
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armel, s390]
    dep: libc6 (>= 2.5) [avr32]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7) [amd64, i386, powerpc, sparc]
  • dep: libc6.1 (>= 2.7) [alpha, ia64]
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libsprng2 [not hurd-i386]
    The SPRNG Scalable Parallel RNG library -- library package
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood
  • sug: phylip
    package of programs for inferring phylogenies
  • sug: treetool
    Package not available

Download tree-puzzle

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 5.2-6 156.9 kB404 kB [list of files]
amd64 5.2-6 142.4 kB340 kB [list of files]
armel 5.2-5 153.0 kB368 kB [list of files]
avr32 (unofficial port) 5.2-5 146.4 kB308 kB [list of files]
hppa 5.2-5 154.0 kB360 kB [list of files]
hurd-i386 5.2-1 582.9 kB848 kB [list of files]
i386 5.2-6 125.5 kB324 kB [list of files]
ia64 5.2-6 212.1 kB668 kB [list of files]
kfreebsd-amd64 5.2-6 142.6 kB322 kB [list of files]
kfreebsd-i386 5.2-6 125.7 kB306 kB [list of files]
m68k (unofficial port) 5.2-5 115.6 kB324 kB [list of files]
mips 5.2-5 163.2 kB444 kB [list of files]
mipsel 5.2-5 162.6 kB444 kB [list of files]
powerpc 5.2-6 151.3 kB364 kB [list of files]
s390 5.2-5 139.9 kB336 kB [list of files]
sparc 5.2-6 137.7 kB340 kB [list of files]