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[ Source: tigr-glimmer  ]

Package: tigr-glimmer (3.02-1)

Gene detection in archea and bacteria

Developed by the TIGR institute this software detects coding sequences in bacteria and archea.

Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching

Other Packages Related to tigr-glimmer

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  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [not arm, armel, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [hurd-i386]
    dep: libgcc1 (>= 1:4.3) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    GCC support library
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.2.1) [hurd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1-4) [not armel, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.3) [armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
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Download tigr-glimmer

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 468.0 kB1104 kB [list of files]
amd64 438.2 kB944 kB [list of files]
arm 384.4 kB731 kB [list of files]
armel 399.8 kB840 kB [list of files]
hppa 487.6 kB1004 kB [list of files]
hurd-i386 386.0 kB856 kB [list of files]
i386 386.7 kB860 kB [list of files]
ia64 569.4 kB1484 kB [list of files]
kfreebsd-amd64 (unofficial port) 437.4 kB852 kB [list of files]
kfreebsd-i386 (unofficial port) 380.5 kB762 kB [list of files]
m68k 385.4 kB836 kB [list of files]
mips 450.9 kB1068 kB [list of files]
mipsel 479.3 kB1188 kB [list of files]
powerpc 457.3 kB968 kB [list of files]
s390 415.5 kB876 kB [list of files]
sparc 399.0 kB876 kB [list of files]