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[ Source: sigma-align  ]

Package: sigma-align (1.1.3-1)

Simple greedy multiple alignment of non-coding DNA sequences

Sigma (“Simple greedy multiple alignment”) is an alignment program with a new algorithm and scoring scheme designed specifically for non-coding DNA sequence. It uses a strategy of seeking the best possible gapless local alignments, at each step making the best possible alignment consistent with existing alignments, and scores the significance of the alignment based on the lengths of the aligned fragments and a background model which may be supplied or estimated from an auxiliary file of intergenic DNA.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to sigma-align

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.9) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.3) [amd64, hppa, i386, mips, mipsel]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armel, powerpc, s390]
    dep: libc6 (>= 2.5) [avr32]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.6) [sparc]
  • dep: libc6.1 (>= 2.3) [ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]
  • dep: libglib2.0-0 (>= 2.12.0)
    The GLib library of C routines

Download sigma-align

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 26.9 kB112 kB [list of files]
amd64 25.5 kB104 kB [list of files]
armel 25.4 kB100 kB [list of files]
avr32 (unofficial port) 25.2 kB96 kB [list of files]
hppa 25.8 kB104 kB [list of files]
hurd-i386 22.6 kB96 kB [list of files]
i386 23.3 kB96 kB [list of files]
ia64 33.3 kB136 kB [list of files]
kfreebsd-amd64 25.0 kB72 kB [list of files]
kfreebsd-i386 22.7 kB66 kB [list of files]
m68k (unofficial port) 21.5 kB92 kB [list of files]
mips 25.2 kB108 kB [list of files]
mipsel 25.3 kB108 kB [list of files]
powerpc 27.6 kB108 kB [list of files]
s390 24.4 kB100 kB [list of files]
sparc 23.1 kB100 kB [list of files]