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Package: sibsim4 (0.17-1)

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: 

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Searching, Supports Format: Plain Text

Other Packages Related to sibsim4

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb

Download sibsim4

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 37.2 kB116 kB [list of files]
amd64 32.0 kB104 kB [list of files]
armel 32.9 kB104 kB [list of files]
avr32 (unofficial port) 34.0 kB92 kB [list of files]
hppa 33.6 kB104 kB [list of files]
hurd-i386 29.9 kB96 kB [list of files]
i386 30.4 kB96 kB [list of files]
ia64 47.3 kB152 kB [list of files]
kfreebsd-amd64 33.2 kB80 kB [list of files]
kfreebsd-i386 31.3 kB72 kB [list of files]
m68k (unofficial port) 27.6 kB92 kB [list of files]
mips 34.2 kB112 kB [list of files]
mipsel 34.2 kB112 kB [list of files]
powerpc 33.9 kB108 kB [list of files]
s390 33.7 kB104 kB [list of files]
sparc 31.2 kB104 kB [list of files]