Download Source Package shogun:
SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing.
SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the R package.
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| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha | 0.9.1-1 | 49.9 kB | 712 kB | [list of files] |
| amd64 | 0.9.1-1 | 49.8 kB | 708 kB | [list of files] |
| armel | 0.9.1-1 | 46.5 kB | 696 kB | [list of files] |
| hppa | 0.9.1-1 | 51.1 kB | 708 kB | [list of files] |
| i386 | 0.9.1-1 | 48.8 kB | 700 kB | [list of files] |
| ia64 | 0.9.1-1 | 51.5 kB | 724 kB | [list of files] |
| kfreebsd-amd64 | 0.9.1-1 | 48.6 kB | 404 kB | [list of files] |
| kfreebsd-i386 | 0.9.1-1 | 47.7 kB | 396 kB | [list of files] |
| mips | 0.9.1-1 | 49.1 kB | 708 kB | [list of files] |
| mipsel | 0.9.1-1 | 47.3 kB | 708 kB | [list of files] |
| powerpc | 0.9.1-1+b1 | 51.2 kB | 708 kB | [list of files] |
| s390 | 0.9.1-1 | 48.5 kB | 704 kB | [list of files] |
| sparc | 0.9.1-1 | 48.1 kB | 700 kB | [list of files] |