Package: rnahybrid (2.1-2 and others)

[ Source: rnahybrid  ]

Fast and effective prediction of microRNA/target duplexes

RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

Public research assisted by RNAhybrid should cite: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich Fast and effective prediction of microRNA/target duplexes RNA, 10:1507-1517, 2004.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing

Other Packages Related to rnahybrid

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.11) [powerpcspe]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13) [s390x]

  dep: libc6 (>= 2.2) [hppa, i386, mips, mipsel]

  dep: libc6 (>= 2.2.5) [amd64]

  dep: libc6 (>= 2.4) [armel, powerpc, s390]

  dep: libc6 (>= 2.5) [avr32]

  dep: libc6 (>= 2.5-5) [m68k]

  dep: libc6 (>= 2.6) [sparc]

  dep: libc6 (>= 2.7) [armhf, sparc64]

  dep: libc6 (>= 2.9) [sh4]

• dep: libc6.1 (>= 2.2) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libg20 [armhf, s390x]

  g2 2D graphics library

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Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha	2.1-2	219.0 kB	492.0 kB	[list of files]
amd64	2.1-2	254.5 kB	588.0 kB	[list of files]
armel	2.1-2	573.0 kB	1,236.0 kB	[list of files]
armhf	2.1-2	321.1 kB	710.0 kB	[list of files]
avr32 (unofficial port)	2.1-2	306.1 kB	660.0 kB	[list of files]
hppa	2.1-2	261.4 kB	732.0 kB	[list of files]
i386	2.1-2	239.9 kB	624.0 kB	[list of files]
ia64	2.1-2	469.9 kB	1,460.0 kB	[list of files]
kfreebsd-amd64	2.1-2	254.6 kB	572.0 kB	[list of files]
kfreebsd-i386	2.1-2	239.7 kB	560.0 kB	[list of files]
m68k (unofficial port)	2.1-2	312.2 kB	888.0 kB	[list of files]
mips	2.1-2	345.5 kB	692.0 kB	[list of files]
mipsel	2.1-2	337.9 kB	692.0 kB	[list of files]
powerpc	2.1-2	217.7 kB	444.0 kB	[list of files]
powerpcspe (unofficial port)	2.1-2+b100	274.1 kB	780.0 kB	[list of files]
s390	2.1-2	203.2 kB	516.0 kB	[list of files]
s390x	2.1-2	225.8 kB	519.0 kB	[list of files]
sh4 (unofficial port)	2.1-2	470.3 kB	1,224.0 kB	[list of files]
sparc	2.1-2	275.0 kB	768.0 kB	[list of files]
sparc64 (unofficial port)	2.1-2	251.5 kB	744.0 kB	[list of files]