Package: r-bioc-oligo (1.66.0+ds-1)

[ Source: r-bioc-oligo  ]

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Other Packages Related to r-bioc-oligo

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-affxparser (>= 1.39.4)

  Affymetrix File Parsing SDK

• dep: r-bioc-affyio (>= 1.35.0)

  BioConductor tools for parsing Affymetrix data files

• dep: r-bioc-biobase (>= 2.27.3)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.13.11)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.35.12)

  GNU R string objects representing biological sequences

• dep: r-bioc-oligoclasses (>= 1.29.6)

  Classes for high-throughput arrays supported by oligo and crlmm

• dep: r-bioc-preprocesscore (>= 1.29.0)

  BioConductor collection of pre-processing functions

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-dbi (>= 0.3.1)

  GNU R package providing a generic database interface

• dep: r-cran-ff

  Memory-Efficient Fast-Access Storage of Large Data

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genefilter

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• sug: r-bioc-limma

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• sug: r-cran-knitr

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• sug: r-cran-rcolorbrewer

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• sug: r-cran-rcurl

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• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-oligo

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	906.7 kB	1,355.0 kB	[list of files]
amd64	907.7 kB	1,343.0 kB	[list of files]
arm64	906.1 kB	1,355.0 kB	[list of files]
armel	906.3 kB	1,334.0 kB	[list of files]
armhf	904.4 kB	1,322.0 kB	[list of files]
hppa (unofficial port)	907.4 kB	1,348.0 kB	[list of files]
i386	909.4 kB	1,346.0 kB	[list of files]
ia64 (unofficial port)	910.9 kB	1,381.0 kB	[list of files]
mips64el	905.4 kB	1,358.0 kB	[list of files]
ppc64 (unofficial port)	910.3 kB	1,420.0 kB	[list of files]
ppc64el	909.4 kB	1,355.0 kB	[list of files]
riscv64	907.2 kB	1,331.0 kB	[list of files]
s390x	908.3 kB	1,343.0 kB	[list of files]
sh4 (unofficial port)	907.4 kB	1,354.0 kB	[list of files]
sparc64 (unofficial port)	904.6 kB	2,317.0 kB	[list of files]
x32 (unofficial port)	907.2 kB	1,338.0 kB	[list of files]