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[ Source: pymol  ]

Package: pymol (1.2r1-3 and others)

Molecular Graphics System

PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations.

Features include: 

 * Visualization of molecules, molecular trajectories and surfaces
   of crystallography data or orbitals
 * Molecular builder and sculptor
 * Internal raytracer and movie generator
 * Fully extensible and scriptable via a Python interface

File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.

Tags: Field: Structural Biology, Chemistry, Implemented in: Python, User Interface: X Window System, Role: Program, Scope: Utility, Interface Toolkit: Tk, Purpose: Data Visualization, Works with: Image, X Window System: Application

Other Packages Related to pymol

  • depends
  • recommends
  • suggests
  • dep: freeglut3
    OpenGL Utility Toolkit
  • dep: hurd [hurd-i386]
    The GNU Hurd
    also a virtual package provided by hurd-udeb
  • dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.9) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.4) [mips, mipsel, s390]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5) [hppa]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7) [amd64, armel, i386, powerpc]
  • dep: libc6.1 (>= 2.7) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libfreetype6 (>= 2.2.1) [not m68k]
    FreeType 2 font engine, shared library files
    dep: libfreetype6 (>= 2.3.5) [m68k]
  • dep: libgcc1 (>= 1:4.1.1) [not armel, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.4) [kfreebsd-amd64, kfreebsd-i386]
    dep: libgcc1 (>= 1:4.4.0) [armel]
    dep: libgcc1 (>= 4.2.1) [hurd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    Package not available
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support library
  • dep: libgl1-mesa-glx
    A free implementation of the OpenGL API -- GLX runtime
    or libgl1
    virtual package provided by libgl1-mesa-glx, libgl1-mesa-swx11
  • dep: libglu1-mesa
    The OpenGL utility library (GLU)
    or libglu1
    virtual package provided by libglu1-mesa
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1-21) [m68k]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1) [not armel, kfreebsd-amd64, kfreebsd-i386, m68k]
    dep: libstdc++6 (>= 4.4) [kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.4.0) [armel]
  • dep: libunwind7 [ia64]
    A library to determine the call-chain of a program - runtime
  • dep: python (<< 2.5) [m68k]
    An interactive high-level object-oriented language (default version)
    dep: python (<< 2.6) [not m68k]
    dep: python (>= 2.4) [m68k]
    dep: python (>= 2.5) [not m68k]
  • dep: python-pmw
    Pmw -- Python MegaWidgets
  • dep: python-support (>= 0.7.1) [m68k]
    automated rebuilding support for Python modules
    dep: python-support (>= 0.90.0) [not m68k]
  • dep: python-tk
    Tkinter - Writing Tk applications with Python
  • dep: zlib1g [m68k]
    compression library - runtime
    dep: zlib1g (>= 1:1.1.4) [not m68k]
  • rec: apbs
    Adaptive Poisson Boltzmann Solver

Download pymol

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 1.2r1-3 6,956.8 kB18060 kB [list of files]
amd64 1.2r1-3 6,519.2 kB17364 kB [list of files]
armel 1.2r1-3 6,408.4 kB17080 kB [list of files]
hppa 1.2r1-2 6,871.0 kB17688 kB [list of files]
hurd-i386 1.2r1-2 6,324.4 kB17296 kB [list of files]
i386 1.2r1-3 6,337.7 kB17312 kB [list of files]
ia64 1.2r1-3 8,110.1 kB22268 kB [list of files]
kfreebsd-amd64 1.2r1-3 6,517.8 kB17002 kB [list of files]
kfreebsd-i386 1.2r1-3 6,340.7 kB16804 kB [list of files]
m68k (unofficial port) 1.1~beta3-2 5,870.9 kB15924 kB [list of files]
mips 1.2r1-3 6,653.8 kB18032 kB [list of files]
mipsel 1.2r1-2 6,661.5 kB18036 kB [list of files]
powerpc 1.2r1-3 6,688.4 kB17460 kB [list of files]
s390 1.2r1-2 6,459.7 kB17288 kB [list of files]
sparc 1.2r1-2 6,417.7 kB17288 kB [list of files]