[  lenny  ] [  squeeze  ] [  sid  ]
[ Source: proda  ]

Package: proda (1.0-7)

multiple alignment of protein sequences

ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.

ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.

Tags: Biology: biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to proda

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1) [not armel, avr32, hppa, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [avr32]
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 1:4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1) [m68k]
    Package not available
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.1.1) [not armel, avr32, kfreebsd-amd64, kfreebsd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1) [avr32]
    dep: libstdc++6 (>= 4.3) [armel]
    dep: libstdc++6 (>= 4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime

Download proda

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 73.1 kB232 kB [list of files]
amd64 66.6 kB196 kB [list of files]
armel 64.5 kB184 kB [list of files]
avr32 (unofficial port) 69.6 kB168 kB [list of files]
hppa 73.1 kB208 kB [list of files]
i386 62.0 kB144 kB [list of files]
ia64 99.3 kB376 kB [list of files]
kfreebsd-amd64 66.6 kB168 kB [list of files]
kfreebsd-i386 61.7 kB158 kB [list of files]
m68k (unofficial port) 54.8 kB184 kB [list of files]
mips 70.0 kB248 kB [list of files]
mipsel 70.2 kB248 kB [list of files]
powerpc 71.3 kB208 kB [list of files]
s390 62.4 kB188 kB [list of files]
sparc 63.2 kB192 kB [list of files]