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Package: poa (2.0+20060928-2)

Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW. POA is published in Bioinformatics. 2004 Jul 10;20(10):1546-56.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Other Packages Related to poa

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • sug: blast2
    Basic Local Alignment Search Tool

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Architecture Package Size Installed Size Files
alpha 51.2 kB228 kB [list of files]
amd64 49.0 kB196 kB [list of files]
armel 52.1 kB204 kB [list of files]
avr32 (unofficial port) 46.6 kB184 kB [list of files]
hppa 48.0 kB212 kB [list of files]
hurd-i386 44.1 kB180 kB [list of files]
i386 44.1 kB184 kB [list of files]
ia64 69.8 kB368 kB [list of files]
kfreebsd-amd64 49.1 kB150 kB [list of files]
kfreebsd-i386 43.9 kB136 kB [list of files]
m68k (unofficial port) 40.6 kB176 kB [list of files]
mips 48.0 kB252 kB [list of files]
mipsel 49.2 kB260 kB [list of files]
powerpc 46.5 kB208 kB [list of files]
s390 51.8 kB208 kB [list of files]
sparc 45.7 kB216 kB [list of files]