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[ Source: debian-med  ]

Links for med-bio

Debian Resources:

• Bug Reports
• Developer Information (PTS)
• Debian Changelog
• Copyright File

Download Source Package debian-med:

• [debian-med_1.3.dsc]
• [debian-med_1.3.tar.gz]

Maintainers:

• Debian Med Packaging Team (QA Page, Mail Archive)
• Andreas Tille (QA Page)

Similar packages:

• med-bio-dev
• med-typesetting
• science-biology
• med-imaging-dev
• med-imaging
• med-physics
• med-cms
• med-epi
• med-doc

Other Packages Related to med-bio

depends

recommends

suggests

• dep: med-config (= 1.3)

  Debian Med Project config package

• dep: med-tasks (= 1.3)

  Debian Med tasks for tasksel

• rec: adun.app

  Molecular Simulator for GNUstep

• rec: altree

  program to perform phylogeny based analyses

• rec: amap-align

  Protein multiple alignment by sequence annealing

• rec: autodock

  analysis of ligand binding to protein structure

• rec: biosquid

  utilities for biological sequence analysis

• rec: blast2

  Basic Local Alignment Search Tool

• rec: boxshade

  Pretty-printing of multiple sequence alignments

• rec: dialign

  Segment-based multiple sequence alignment

• rec: dialign-tx

  Segment-based multiple sequence alignment

• rec: embassy-domainatrix

  Extra EMBOSS commands to handle domain classification file

• rec: embassy-domalign

  Extra EMBOSS commands for protein domain alignment

• rec: emboss

  the european molecular biology open software suite

• rec: exonerate

  generic tool for pairwise sequence comparison

• rec: fastdnaml

  Tool for construction of phylogenetic trees of DNA sequences

• rec: fastlink

  A faster version of pedigree programs of Linkage

• rec: gamgi

  construct, view and analyse atomic structures

• rec: garlic

  A visualization program for biomolecules

• rec: gdpc

  visualiser of molecular dynamic simulations

• rec: gff2aplot

  pair-wise alignment-plots for genomic sequences in PostScript

• rec: gff2ps

  produces PostScript graphical output from GFF-files

• rec: ghemical

  A GNOME molecular modelling environment

• rec: glam2

  gapped protein motifs from unaligned sequences

• rec: gromacs

  Molecular dynamics simulator, with building and analysis tools

• rec: hmmer

  profile hidden Markov models for protein sequence analysis

• rec: kalign

  Global and progressive multiple sequence alignment

• rec: last-align

  genome-scale comparison of biological sequences

• rec: loki

  MCMC linkage analysis on general pedigrees

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: maq

  maps short fixed-length polymorphic DNA sequence reads to reference sequences

• rec: massxpert

  linear polymer mass spectrometry software

• rec: melting

  compute the melting temperature of nucleic acid duplex

• rec: mipe

  Tools to store PCR-derived data

• rec: mummer

  Efficient sequence alignment of full genomes

• rec: muscle

  Multiple alignment program of protein sequences

• rec: mustang

  multiple structural alignment of proteins

• rec: ncbi-epcr

  Tool to test a DNA sequence for the presence of sequence tagged sites

• rec: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• rec: ncbi-tools-x11

  NCBI libraries for biology applications (X-based utilities)

• rec: njplot

  A phylogenetic tree drawing program

• rec: perlprimer

  Graphical design of primers for PCR

• rec: phyml

  Phylogenetic estimation using Maximum Likelihood

• rec: plasmidomics

  draw plasmids and vector maps with PostScript graphics export

• rec: poa

  Partial Order Alignment for multiple sequence alignment

• rec: primer3

  Tool to design flanking oligo nucleotides for DNA amplification

• rec: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• rec: proda

  multiple alignment of protein sequences

• rec: pymol

  Molecular Graphics System

• rec: r-cran-qtl

  GNU R package for genetic marker linkage analysis

• rec: r-other-bio3d

  GNU R package for biological structure analysis

• rec: rasmol

  Visualize biological macromolecules

• rec: readseq

  [Biology] Conversion between sequence formats

• rec: rnahybrid

  Fast and effective prediction of microRNA/target duplexes

• rec: seaview

  Multiplatform interface for sequence alignment and phylogeny

• rec: sibsim4

  align expressed RNA sequences on a DNA template

• rec: sigma-align

  Simple greedy multiple alignment of non-coding DNA sequences

• rec: sim4

  tool for aligning cDNA and genomic DNA

• rec: ssake

  genomics application for assembling millions of very short DNA sequences

• rec: t-coffee

  Multiple Sequence Alignment

• rec: theseus

  superimpose macromolecules using maximum likelihood

• rec: tigr-glimmer

  Gene detection in archea and bacteria

• rec: tree-puzzle

  Reconstruction of phylogenetic trees by maximum likelihood

  or tree-ppuzzle

  Parallelized reconstruction of phylogenetic trees by maximum likelihood

• rec: treeviewx

  Displays and prints phylogenetic trees

• rec: velvet

  Nucleic acid sequence assembler for very short reads

• rec: wise

  comparison of biopolymers, commonly DNA and protein sequences

• sug: acedb-other

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• sug: acedb-other-belvu

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• sug: acedb-other-dotter

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• sug: act

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• sug: agdbnet

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• sug: alien-hunter

  Interpolated Variable Order Motifs to identify horizontally acquired DNA

• sug: amos-assembler

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• sug: amoscmp

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• sug: arb

  Integrated package for sequence database handling and analysis

• sug: artemis

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• sug: asap

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• sug: autodocktools

  GUI to help set up, launch and analyze AutoDock dockings

• sug: axparafit

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• sug: axpcoords

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• sug: ballview

  A free molecular modeling and molecular graphics tool

• sug: bambus

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• sug: beast-mcmc

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• sug: big-blast

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• sug: bio-mauve

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• sug: cactus

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• sug: caftools

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• sug: cap3

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• sug: cd-hit

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• sug: cdna-db

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• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: clustalw-mpi

  MPI-distributed global sequence alignment with ClustalW

• sug: clustalx

  Multiple alignment of nucleic acid and protein sequences (graphical interface)

• sug: cluster3

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• sug: coalesce

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• sug: contralign

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• sug: coot

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• sug: copycat

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• sug: cytoscape

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• sug: das-proserver

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• sug: dazzle

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• sug: decipher

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• sug: dotter

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• sug: dotur

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• sug: ecell

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• sug: elph

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• sug: emboss-explorer

  web-based GUI to EMBOSS

• sug: emboss-kaptain

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• sug: est-db

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• sug: estferret

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• sug: estscan

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• sug: exalt

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• sug: fasta

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• sug: fastx-toolkit

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• sug: figaro

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• sug: finex

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• sug: fluctuate

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• sug: forester

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• sug: galaxy

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• sug: gbioseq

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• sug: gbrowse

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• sug: genesplicer

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• sug: genetrack

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• sug: genezilla

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• sug: genographer

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• sug: glimmerhmm

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• sug: gmv

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• sug: grogui

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• sug: haploview

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• sug: hawkeye

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• sug: hexamer

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• sug: infernal

  inference of RNA secondary structural alignments

• sug: jalview

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• sug: jigsaw

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• sug: jmol

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• sug: jtreeview

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• sug: kempbasu

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• sug: lamarc

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• sug: logomat-m

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• sug: lucy

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• sug: mage2tab

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• sug: martj

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• sug: mauvealigner

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• sug: maxd

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• sug: meme

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• sug: mesquite

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• sug: migrate

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• sug: minimus

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• sug: mira

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• sug: mirbase

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• sug: molekel

  Package not available

• sug: molphy

  Program Package for MOLecular PHYlogenetics

• sug: mozilla-biofox

  extension of bioinformatics tools to Iceape and Iceweasel browsers

• sug: mrbayes

  Package not available

• sug: msatfinder

  Package not available

• sug: mummergpu

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• sug: murasaki

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• sug: mview

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• sug: ncoils

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• sug: ngila

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• sug: obo-edit

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• sug: oligoarrayaux

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• sug: omegamap

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• sug: operondb

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• sug: partigene

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• sug: pdb2pqr

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• sug: pfaat

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• sug: pftools

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• sug: phpphylotree

  Package not available

• sug: phylip

  package of programs for inferring phylogenies

• sug: phylographer

  Package not available

• sug: phylowin

  Package not available

• sug: plink

  whole-genome association analysis toolset

• sug: populations

  Package not available

• sug: prank

  Package not available

• sug: proalign

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• sug: profit

  Package not available

• sug: prot4est

  Package not available

• sug: pyrophosphate-tools

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• sug: qtlcart

  Package not available

• sug: r-ape

  Package not available

• sug: r-other-genabel

  Package not available

• sug: r-other-mott-happy

  GNU R package for fine-mapping complex diseases

• sug: raster3d

  tools for generating images of proteins or other molecules

• sug: raxml

  Package not available

• sug: rbs-finder

  Package not available

• sug: recombine

  Package not available

• sug: repeatfinder

  Package not available

• sug: reputer

  Package not available

• sug: roche454ace2caf

  Package not available

• sug: rose

  Package not available

• sug: rosetta

  Package not available

• sug: samtools

  processing sequence alignments in SAM and BAM formats

• sug: seq-gen

  Package not available

• sug: sequenceconverter.app

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• sug: smile

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• sug: spice

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• sug: splitstree

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• sug: srf

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• sug: ssaha

  Package not available

• sug: staden-io-lib-utils

  programs for maniuplating DNA sequencing files

• sug: tacg

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• sug: taverna

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• sug: taxinspector

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• sug: tetra

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• sug: tm-align

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• sug: trace2dbest

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• sug: tracetuner

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• sug: transtermhp

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• sug: treeplot

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• sug: treetool

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• sug: treevolve

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• sug: trnascan-se

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• sug: twain

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• sug: uniprime

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• sug: vienna-rna

  Package not available

• sug: wgs-assembler

  Package not available

Download med-bio

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	17.5 kB	172 kB	[list of files]