Package: maq (0.7.1-4 and others)

[ Source: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Biology: Nucleic Acids, Field: Biology, Bioinformatics, Implemented in: C++, Perl, User Interface: Command Line, : qa::low-popcon, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Searching, Supports Format: Plain Text

Other Packages Related to maq

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc0.3 (>= 2.11) [hurd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.3-udeb

• dep: libc6 (>= 2.11) [hppa, powerpcspe, sh4]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13) [s390x]

  dep: libc6 (>= 2.3) [amd64, i386, mips, mipsel, sparc64]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.5) [avr32]

  dep: libc6 (>= 2.5-5) [m68k]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc1 [kfreebsd-amd64, kfreebsd-i386, powerpcspe, sh4, sparc64]

  GCC support library

  dep: libgcc1 (>= 1:4.1.1) [alpha, amd64, i386, ia64, s390x, sparc]

  dep: libgcc1 (>= 1:4.2.1) [avr32, mips, mipsel, powerpc, s390]

  dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

  dep: libgcc1 (>= 4.2.1) [hurd-i386]

• dep: libgcc2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 [kfreebsd-amd64, kfreebsd-i386, powerpcspe, sh4, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.1.1) [not avr32, kfreebsd-amd64, kfreebsd-i386, powerpcspe, sh4, sparc64]

  dep: libstdc++6 (>= 4.2.1) [avr32]

• dep: libunwind7 [ia64]

  A library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.2.3.3.dfsg)

  compression library - runtime

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM and BAM formats

Download maq

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha	0.7.1-4	357.4 kB	688.0 kB	[list of files]
amd64	0.7.1-4	325.9 kB	628.0 kB	[list of files]
armel	0.7.1-4	337.1 kB	640.0 kB	[list of files]
armhf	0.7.1-4	336.1 kB	528.0 kB	[list of files]
avr32 (unofficial port)	0.7.1-3	347.1 kB	616.0 kB	[list of files]
hppa	0.7.1-4	360.2 kB	672.0 kB	[list of files]
hurd-i386	0.7.1-4	333.6 kB	668.0 kB	[list of files]
i386	0.7.1-4	332.2 kB	660.0 kB	[list of files]
ia64	0.7.1-4	393.1 kB	876.0 kB	[list of files]
kfreebsd-amd64	0.7.1-4	325.7 kB	590.0 kB	[list of files]
kfreebsd-i386	0.7.1-4	333.3 kB	622.0 kB	[list of files]
m68k (unofficial port)	0.7.1-3	323.5 kB	648.0 kB	[list of files]
mips	0.7.1-4	359.9 kB	712.0 kB	[list of files]
mipsel	0.7.1-4	358.7 kB	712.0 kB	[list of files]
powerpc	0.7.1-4	358.0 kB	668.0 kB	[list of files]
powerpcspe (unofficial port)	0.7.1-4	356.5 kB	668.0 kB	[list of files]
s390	0.7.1-4	337.3 kB	648.0 kB	[list of files]
s390x	0.7.1-4	335.8 kB	601.0 kB	[list of files]
sh4 (unofficial port)	0.7.1-4	361.1 kB	652.0 kB	[list of files]
sparc	0.7.1-4	353.2 kB	668.0 kB	[list of files]
sparc64 (unofficial port)	0.7.1-4	335.9 kB	644.0 kB	[list of files]