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[ Source: mafft  ]

Package: mafft (6.716-1 and others)

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: 

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods: 
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

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Download mafft

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 6.716-1 3,116.0 kB7876 kB [list of files]
amd64 6.716-1 2,822.8 kB6624 kB [list of files]
armel 6.716-1 2,856.9 kB6440 kB [list of files]
avr32 (unofficial port) 6.716-1 3,078.3 kB5344 kB [list of files]
hppa 6.713-1 2,682.0 kB6060 kB [list of files]
hurd-i386 6.716-1 2,231.2 kB5432 kB [list of files]
i386 6.716-1 2,233.7 kB5432 kB [list of files]
ia64 6.716-1 4,086.4 kB13116 kB [list of files]
kfreebsd-amd64 6.713-1 2,817.3 kB6842 kB [list of files]
kfreebsd-i386 6.716-1 2,229.3 kB5476 kB [list of files]
m68k (unofficial port) 6.240-2 1,394.8 kB3672 kB [list of files]
mips 6.716-1 2,813.8 kB7548 kB [list of files]
mipsel 6.716-1 2,821.1 kB7544 kB [list of files]
powerpc 6.716-1 2,724.3 kB6400 kB [list of files]
s390 6.716-1 2,540.5 kB6000 kB [list of files]
sparc 6.716-1 2,383.2 kB5804 kB [list of files]