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Package: libbio-samtools-perl (1.09-1)

read SAM/BAM nucleotide sequence aligment database files

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

Tags: Software Development: Perl Development, Libraries, Implemented in: C, Perl, Role: Shared Library

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  • dep: libc6 (>= 2.4) [amd64]
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    dep: libc6 (>= 2.5) [avr32]
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  • dep: perl (>= 5.10.1-6+avr32) [avr32]
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Download libbio-samtools-perl

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 193.2 kB640 kB [list of files]
amd64 178.3 kB532 kB [list of files]
avr32 (unofficial port) 169.5 kB476 kB [list of files]
hppa 192.4 kB584 kB [list of files]
hurd-i386 185.1 kB544 kB [list of files]
i386 185.3 kB544 kB [list of files]
ia64 238.8 kB844 kB [list of files]
kfreebsd-amd64 180.0 kB482 kB [list of files]
kfreebsd-i386 185.1 kB498 kB [list of files]
mips 171.3 kB644 kB [list of files]
mipsel 171.9 kB644 kB [list of files]
powerpc 188.5 kB552 kB [list of files]
s390 178.3 kB556 kB [list of files]