Package: kalign (1:2.03+20110620-2 and others)

[ Source: kalign  ]

Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to kalign

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc0.3 (>= 2.3) [hurd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.3-udeb

• dep: libc6 (>= 2.11) [powerpcspe]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13) [s390x, sh4]

  dep: libc6 (>= 2.3) [amd64, hppa, i386, mips, mipsel, sparc64]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.5) [avr32]

  dep: libc6 (>= 2.5-5) [m68k]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

Download kalign

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1:2.03+20110620-2	106.6 kB	285.0 kB	[list of files]
amd64	1:2.03+20110620-2	92.6 kB	244.0 kB	[list of files]
armel	1:2.03+20110620-2	87.4 kB	227.0 kB	[list of files]
armhf	1:2.03+20110620-2	71.6 kB	168.0 kB	[list of files]
avr32 (unofficial port)	2.04-2	100.1 kB	216.0 kB	[list of files]
hppa	2.04-2	93.7 kB	264.0 kB	[list of files]
hurd-i386	1:2.03+20110620-2+b1	81.1 kB	225.0 kB	[list of files]
i386	1:2.03+20110620-2	76.6 kB	217.0 kB	[list of files]
ia64	1:2.03+20110620-2	163.5 kB	503.0 kB	[list of files]
kfreebsd-amd64	1:2.03+20110620-2	92.6 kB	206.0 kB	[list of files]
kfreebsd-i386	1:2.03+20110620-2	76.5 kB	178.0 kB	[list of files]
m68k (unofficial port)	2.04-1	70.1 kB	228.0 kB	[list of files]
mips	1:2.03+20110620-2	81.8 kB	228.0 kB	[list of files]
mipsel	1:2.03+20110620-2	82.2 kB	228.0 kB	[list of files]
powerpc	1:2.03+20110620-2	83.7 kB	219.0 kB	[list of files]
powerpcspe (unofficial port)	1:2.03+20110620-1	105.1 kB	272.0 kB	[list of files]
s390	1:2.03+20110620-2	82.8 kB	221.0 kB	[list of files]
s390x	1:2.03+20110620-2	98.8 kB	260.0 kB	[list of files]
sh4 (unofficial port)	1:2.03+20110620-2	84.1 kB	195.0 kB	[list of files]
sparc	1:2.03+20110620-2	76.9 kB	211.0 kB	[list of files]
sparc64 (unofficial port)	1:2.03+20110620-2	86.9 kB	229.0 kB	[list of files]