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[ Source: kalign  ]

Package: kalign (2.04-2 and others)

Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to kalign

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.9) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.3) [amd64, hppa, i386, mips, mipsel]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armel, powerpc, s390]
    dep: libc6 (>= 2.5) [avr32]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.6) [sparc]
  • dep: libc6.1 (>= 2.3) [ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]

Download kalign

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.04-2 103.9 kB316 kB [list of files]
amd64 2.04-2 98.9 kB288 kB [list of files]
armel 2.04-2 104.5 kB284 kB [list of files]
avr32 (unofficial port) 2.04-2 100.1 kB216 kB [list of files]
hppa 2.04-2 93.7 kB264 kB [list of files]
hurd-i386 2.04-2 85.9 kB264 kB [list of files]
i386 2.04-2 85.7 kB264 kB [list of files]
ia64 2.04-2 152.8 kB532 kB [list of files]
kfreebsd-amd64 2.04-2 98.8 kB276 kB [list of files]
kfreebsd-i386 2.04-2 85.9 kB228 kB [list of files]
m68k (unofficial port) 2.04-1 70.1 kB228 kB [list of files]
mips 2.04-2 91.4 kB308 kB [list of files]
mipsel 2.04-2 92.1 kB308 kB [list of files]
powerpc 2.04-2 94.3 kB280 kB [list of files]
s390 2.04-2 93.7 kB268 kB [list of files]
sparc 2.04-2 81.9 kB256 kB [list of files]