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[ Source: seaview  ]

Package: seaview (1:2.4-1)

Multiple sequence alignment editor

SeaView is a graphical multiple sequence alignment editor developed by Manolo Gouy. Multiple alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE) are supported for reading and writing. Alignments can be manually edited. The user is further supported by an integration of external programs, i.e., to run DOT-PLOT or MUSCLE, to locally improve the alignment.

When using SeaView for investigations that lead to a publication, please cite the following reference:

Galtier, N., Gouy, M. and Gautier, C. (1996) "SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny." Comput. Applic. Biosci. 12:543-548.

Tags: Field: Biology, Implemented in: C, C++, User Interface: X Window System, Role: Program, Scope: Utility, Interface Toolkit: FLTK, Purpose: Editing, Printing, Supports Format: Plain Text, X Window System: Application

Other Packages Related to seaview

  • depends
  • recommends
  • suggests
  • dep: libc6.1 (>= 2.7-1)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libgcc1 (>= 1:4.1.1-21)
    GCC support library
  • dep: libstdc++6 (>= 4.1.1-21)
    The GNU Standard C++ Library v3
  • dep: libunwind7 (>= 0.98.5-6)
    A library to determine the call-chain of a program - runtime
  • dep: libx11-6
    X11 client-side library
  • rec: xterm
    X terminal emulator
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    Multiple alignment program of protein sequences

Download seaview

Download for all available architectures
Architecture Package Size Installed Size Files
ia64 216.1 kB616 kB [list of files]