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[ Source: amap-align  ]

Package: amap-align (2.2-1)

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to amap-align

  • depends
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  • dep: libc6.1 (>= 2.7-1)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21)
    GCC support library
  • dep: libstdc++6 (>= 4.2.1-4)
    The GNU Standard C++ Library v3
  • dep: libunwind7 (>= 0.98.5-6)
    A library to determine the call-chain of a program - runtime

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Architecture Package Size Installed Size Files
ia64 222.6 kB568 kB [list of files]