Software Packages in "sid", Subsection science

3depict (0.0.10-1+b1 [amd64], 0.0.10-1 [alpha, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.0.9-1 [sparc64], 0.0.6-1 [powerpcspe], 0.0.2-1 [hppa])

visualisation and analysis for single valued point data

abacas (1.3.1-1)

Algorithm Based Automatic Contiguation of Assembled Sequences

abinit (5.3.4.dfsg-3+b100 [powerpcspe], 5.3.4.dfsg-3+b2 [hurd-i386], 5.3.4.dfsg-3+b1 [mips, mipsel], 5.3.4.dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, powerpc, s390, s390x, sh4, sparc, sparc64])

A package for electronic structure calculations

abyss (1.3.4-2) [non-free]

de novo, parallel, sequence assembler for short reads

acedb-other (4.9.39+dfsg.01-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.9.39+dfsg.01-2 [hppa, powerpcspe])

retrieval of DNA or protein sequences

acedb-other-belvu (4.9.39+dfsg.01-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.9.39+dfsg.01-2 [hppa, powerpcspe])

multiple sequence alignment editor

acedb-other-dotter (4.9.39+dfsg.01-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.9.39+dfsg.01-2 [hppa, powerpcspe])

visualisation of sequence similarity

aces3 (3.0.6-4 [alpha, amd64, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.0.6-1 [armel, armhf, hurd-i386, i386])

Advanced Concepts in Electronic Structure III

achilles (2-8+b1 [hurd-i386], 2-8 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

An artificial life and evolution simulator

aeskulap (0.2.2b1-11+b1 [hurd-i386], 0.2.2b1-11 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2.2b1-8 [powerpcspe], 0.2.2b1-6 [avr32, hppa], 0.2.2b1-4 [m68k])

medical image viewer and DICOM network client

aghermann (0.5.90-2)

Sleep-research experiment manager

algotutor (0.8.6-1)

program for observing the intermediate steps of algorithm

alien-hunter (1.7-1)

Interpolated Variable Order Motifs to identify horizontally acquired DNA

altree (1.0.1-7+b1 [hurd-i386], 1.0.1-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.0.1-5+b2 [sparc64], 1.0.1-4 [hppa, powerpcspe], 1.0.1-3 [avr32, m68k])

program to perform phylogeny-based association and localization analysis

altree-examples (1.0.1-7)

example files for ALTree

amap-align (2.2-3+b1 [hurd-i386], 2.2-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 2.2-2 [hppa], 2.2-1 [avr32, m68k])

Protein multiple alignment by sequence annealing

ampliconnoise (1.25-1+b1 [hurd-i386], 1.25-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, sparc, sparc64], 1.22-2 [sh4])

Programs for the removal of noise from 454 sequenced PCR amplicons

ants (1.9.2+svn680.dfsg-4 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390x, sparc], 1.9.2+svn680.dfsg-2 [armhf, mips], 1.9+svn532-5 [hppa, mipsel, s390])

advanced normalization tools for brain and image analysis

apbs (1.3.0-2+b1 [hurd-i386], 1.3.0-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2.1b-1+b100 [powerpcspe], 1.2.1b-1 [avr32, hppa], 1.0.0-2 [m68k])

Adaptive Poisson Boltzmann Solver

arb (5.3-3) [non-free]

Integrated package for sequence database handling and analysis

arb-common (5.3-3) [non-free]

Integrated package for sequence database handling and analysis

astronomical-almanac (5.6-4+b1 [hurd-i386], 5.6-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.6-3+b100 [powerpcspe], 5.6-3 [avr32, hppa, m68k])

astronomical almanac - calculate planet and star positions

autodock (4.2.3-2+b1 [hurd-i386], 4.2.3-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 4.2.3-1 [avr32, hppa], 4.2.1+rc1-2 [m68k])

analysis of ligand binding to protein structure

autodock-getdata (4.2.3-2)

instructions for getData to collect compounds

autodock-test (4.2.3-2)

test files for AutoDock

autodock-vina (1.1.2-2+b2 [hurd-i386], 1.1.2-2+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.1.2-2 [sh4, sparc64], 1.1.2-1 [powerpcspe], 1.1.1-3 [hppa])

docking of small molecules to proteins

autodocktools (1.5.6~rc3~cvs.20120206-1) [non-free]

GUI to help set up, launch and analyze AutoDock dockings

autogrid (4.2.3-2+b1 [hurd-i386], 4.2.3-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 4.2.3-1 [avr32, hppa], 4.2.1+rc1-2 [m68k])

pre-calculate binding of ligands to their receptor

autogrid-test (4.2.3-2)

test files for AutoGrid

avce00 (2.0.0-2+b100 [powerpcspe], 2.0.0-2+b1 [hurd-i386], 2.0.0-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.

avida-base (2.0b7-4.2)

Auto-adaptive genetic system for Artificial Life research

avida-qt-viewer (2.0b7-4.2)

qt viewer for avida

avida-viewer (2.0b7-4.2)

ncurses viewer for avida

avogadro (1.0.3-3.1+b3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.0.3-3.1+b1 [sh4], 1.0.3-3.1 [sparc64], 1.0.3-1 [powerpcspe], 1.0.1-3.2 [hppa], 0.8.1-5 [m68k])

Molecular Graphics and Modelling System

avogadro-data (1.0.3-3.1)

Molecular Graphics and Modelling System (Data Files)

aweather (0.7-1)

Advanced Weather Monitoring Program

ballview (1.4.1+20111206-3+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.4.1+20111206-3+b1 [sh4], 1.4.1+20111206-3 [sparc64], 1.4.0-4 [powerpcspe])

free molecular modeling and molecular graphics tool

bauble (0.9.7-2)

biodiversity collection manager software application

bedtools (2.16.1-1+b1 [hurd-i386], 2.16.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.12.0-1 [powerpcspe])

suite of utilities for comparing genomic features

bibus (1.5.2-1)

bibliographic database

biogenesis (0.8-1)

artificial life program that simulates evolution of organisms

biomaj (1.2.0-5)

biological data-bank updater

biomaj-properties (1.2.0-5)

biological data-bank updater - example properties files

biomaj-watcher (1.2.0-7) [contrib]

biological data-bank updater - web interface

bioperl (1.6.901-3)

Perl tools for computational molecular biology

bioperl-run (1.6.9-1)

BioPerl wrappers: scripts

biosig-tools (1.3.0-2 [amd64, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, s390x], 1.3.0-1 [armel, armhf, mips, mipsel], 0.96.3+svn2677-3 [alpha, sh4])

format conversion tools for biomedical data formats

biosquid (1.9g+cvs20050121-2+b101 [powerpcspe], 1.9g+cvs20050121-2+b1 [hurd-i386], 1.9g+cvs20050121-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

utilities for biological sequence analysis

bist (0.5.2-1+b1 [hurd-i386], 0.5.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.5.1-4 [sparc64], 0.5.1-1 [hppa, powerpcspe])

chemical drawing tool

bkchem (0.13.0-4)

Chemical structures editor

blast2 (1:2.2.25.20110713-6 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1:2.2.25.20110713-4 [alpha, sh4, sparc64], 1:2.2.25.20110713-1 [powerpcspe], 1:2.2.24.20100808-2 [hppa], 1:2.2.21.20090809-1 [avr32], 1:2.2.18.20080302-4 [m68k])

Basic Local Alignment Search Tool

blimps-utils (3.9-1) [non-free]

blocks database improved searcher

bodr (9-1)

Blue Obelisk Data Repository

boinc-app-milkyway (0.18d-1.1+b1 [hurd-i386], 0.18d-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.18d-1 [hppa, m68k, powerpcspe])

Milkyway@home application for the BOINC client

boinc-app-seti (6.12~svn1305-2 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, s390, s390x, sh4, sparc, sparc64], 5.13+cvs20060510-7+b1 [hurd-i386], 5.13+cvs20060510-7 [hppa, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe], 5.13+cvs20060510-6 [m68k])

SETI@home application for the BOINC client

boolector (1.4.ffc2089.100608-1+b1 [hurd-i386], 1.4.ffc2089.100608-1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

SMT solver for bit-vectors and arrays

bowtie (0.12.7-3+b1 [hurd-i386], 0.12.7-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, s390x, sh4, sparc, sparc64], 0.12.7-1 [powerpcspe])

ultrafast memory-efficient short read aligner

bowtie-examples (0.12.7-3)

Examples for bowtie, the ultrafast memory-efficient short read aligner

bowtie2 (2.0.0-beta6-3)

ultrafast memory-efficient short read aligner

bowtie2-examples (2.0.0-beta6-3)

Examples for bowtie2,

boxshade (3.3.1-6+b1 [hurd-i386], 3.3.1-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.3.1-5 [hppa, powerpcspe], 3.3.1-4 [avr32, m68k])

Pretty-printing of multiple sequence alignments

bppphyview (0.2.1-1+b1 [hurd-i386], 0.2.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2.0-1 [powerpcspe])

Bio++ Phylogenetic Viewer

bppsuite (0.7.0-1+b1 [hurd-i386], 0.7.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.6.2-1 [powerpcspe])

Bio++ program suite

bwa (0.6.1-1+b1 [hurd-i386], 0.6.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.5.9-2 [hppa, powerpcspe], 0.5.7-1 [avr32])

Burrows-Wheeler Aligner

cain (1.9-4)

simulations of chemical reactions

cain-examples (1.9-4)

simulations of chemical reactions

cain-solvers (1.9-4 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc, sparc64], 1.9-2 [sh4])

simulations of chemical reactions

caret (5.6.4~dfsg.1-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 5.6.4~dfsg.1-1 [sh4], 5.6.1.3~dfsg.1-4 [hppa])

Computerized Anatomical Reconstruction and Editing Toolkit

cassbeam (1.0-8) [debports]

A program for Cassegrain antenna modelling

cba (0.3.6-4+b1 [hurd-i386], 0.3.6-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

Continuous Beam Analysis

cbflib-bin (0.7.9.1-3+b100 [powerpcspe], 0.7.9.1-3+b1 [hurd-i386], 0.7.9.1-3 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

utilities to manipulate CBF files

cbmc (4.1-1.2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.0-3 [powerpcspe])

bounded model checker for C and C++ programs

cclib (1.0.1-2)

Parsers and algorithms for computational chemistry

cclib-data (1.0.1-3) [non-free]

Parsers and algorithms for computational chemistry (data files)

cd-hit (4.6-2012-04-25-1+b1 [hurd-i386], 4.6-2012-04-25-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

suite of programs designed to quickly group sequences

celestia (1.6.1+dfsg-2)

real-time visual space simulation

celestia-common (1.6.1+dfsg-2)

datafiles for Celestia, a real-time visual space simulation

celestia-common-nonfree (1.6.1-1) [non-free]

Non-free datafiles for Celestia, a real-time visual space simulation

celestia-glut (1.6.1+dfsg-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.6.1+dfsg-1 [sparc64], 1.6.0+dfsg-4 [powerpcspe], 1.6.0+dfsg-2 [hppa], 1.5.1+dfsg1-1 [m68k])

real-time visual space simulation (GLUT frontend)

cernlib (20061220+dfsg3-2)

CERNLIB data analysis suite - general use metapackage

cernlib-core (20061220+dfsg3-2)

CERNLIB data analysis suite - main libraries and programs

cernlib-extras (20061220+dfsg3-2)

CERNLIB data analysis suite - extra programs

cernlib-montecarlo (20061220+dfsg3-1)

CERNLIB Monte Carlo libraries

cgns-convert (3.1.3.4-1+b1 [hurd-i386], 3.1.3.4-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.5.5-1 [hppa, powerpcspe], 2.5.3-3 [m68k])

CFD General Notation System - Conversion tools

chemical-structures (2.2.dfsg.0-8)

set of molecular structures in open formats

chemtool (1.6.13-1+b1 [hurd-i386], 1.6.13-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.6.12-1+b100 [powerpcspe], 1.6.12-1 [avr32, hppa, m68k])

chemical structures drawing program

circos (0.55-2)

Package for visualizing data and information

circos-tools (0.16-2)

Helper tools for Circos

clinica (0.2.1~dfsg-1+b1 [hurd-i386], 0.2.1~dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Simple medical records manager

clinica-common (0.2.1~dfsg-1)

Simple medical records manager (architecture independent files)

clinica-dev (0.2.1~dfsg-1+b1 [hurd-i386], 0.2.1~dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Simple medical records manager (development files)

clinica-plugins (0.2.1~dfsg-1+b1 [hurd-i386], 0.2.1~dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Simple medical records manager (plugins)

clonalframe (1.2-3+b1 [hurd-i386], 1.2-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2-2 [powerpcspe])

inference of bacterial microevolution using multilocus sequence data

clustalo (1.1.0-1)

General purpose multiple sequence alignment program for proteins

clustalw (2.1+lgpl-2+b2 [hurd-i386], 2.1+lgpl-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

global multiple nucleotide or peptide sequence alignment

clustalw-mpi (0.15-2 [amd64], 0.15-1 [alpha, hppa]) [non-free]

MPI-distributed global sequence alignment with ClustalW

clustalx (2.1+lgpl-2+b1 [hurd-i386], 2.1+lgpl-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.1+lgpl-1 [hppa, powerpcspe])

Multiple alignment of nucleic acid and protein sequences (graphical interface)

cmtk (2.2.1-1)

Computational Morphometry Toolkit

code-aster (10.6.0-1-4)

Code_Aster finite element program - metapackage

code-aster-engine (10.6.0-1-4)

Code_Aster finite element program - sequential binary

code-aster-gui (1.10.4-1)

Graphical user interface for Code_Aster - client

code-aster-mpi-engine (10.6.0-1-4)

Code_Aster finite element program - parallel binary

code-aster-run (1.10.4-1)

Graphical user interface for Code_Aster - server

code-aster-test (10.6.0-1-4)

Code_Aster finite element program - test files and examples

code-saturne (2.1.7-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 2.1.6-1 [alpha])

General purpose Computational Fluid Dynamics (CFD) software

code-saturne-bin (2.1.7-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 2.1.6-1 [alpha])

General purpose Computational Fluid Dynamics (CFD) software - binaries

code-saturne-data (2.1.7-1)

General purpose Computational Fluid Dynamics (CFD) software - data

code-saturne-doc (2.1.7-1 [all], 2.0.1-4 [alpha, armhf])

General purpose Computational Fluid Dynamics (CFD) software - Documentation

code-saturne-include (2.1.7-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 2.1.6-1 [alpha])

General purpose Computational Fluid Dynamics (CFD) software - includes

coinor-csdp (6.1.1-1+b1 [hurd-i386], 6.1.1-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc])

A software package for semidefinite programming

coinor-libcgl0 (0.55.0-1.1+b1 [hurd-i386], 0.55.0-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.55.0-1 [hppa, powerpcspe], 0.54.2-1 [avr32])

Cut Generator Library, a library of cutting-plane generators

coinor-libclp0 (1.12.0-2.1+b1 [hurd-i386], 1.12.0-2.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.12.0-2 [hppa, powerpcspe], 1.10.2-1 [avr32], 1.10.0-1 [m68k])

Coin-or linear programming solver

coinor-libcoinutils0 (2.6.4-3+b2 [hurd-i386], 2.6.4-3+b1 [powerpcspe], 2.6.4-3 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.6.0-1 [avr32], 2.5.0-1 [m68k])

Coin-or collection of utility classes

coinor-libdylp0 (1.6.0-1.1+b1 [hurd-i386], 1.6.0-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.6.0-1+b1 [powerpcspe], 1.6.0-1 [hppa], 1.5.0-3 [avr32], 1.5.0-1 [m68k])

Linear programming solver using the dynamic simplex algorithm

coinor-libflopc++0 (1.0.6-3.1+b1 [hurd-i386], 1.0.6-3.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.0.6-3 [hppa], 1.0.6-1 [avr32])

Formulation of Linear Optimization Problems in C++

coinor-libosi0 (0.103.0-1+b2 [hurd-i386], 0.103.0-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.100.2-1 [avr32], 0.100.0-1 [m68k])

COIN-OR Open Solver Interface

coinor-libsymphony0 (5.2.4-1.2 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.2.4-1 [hppa, powerpcspe])

COIN-OR solver for mixed-integer linear programs

coinor-libvol0 (1.1.7-1+b2 [hurd-i386], 1.1.7-1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

Coin-or linear programming solver

complearn-gui (1.0.7-1) [debports]

interactive 3d data mining tool and demo for universal machine learning

complearn-tools (1.1.7-1 [alpha, armhf, hppa], 1.1.6-1 [avr32], 1.1.5-1 [m68k])

complearn machine-learning command-line utilities

condor (7.8.0~dfsg.1-1)

distributed workload management system

cp2k (2.2.426-4)

Ab Initio Molecular Dynamics

cp2k-data (2.2.426-4)

Ab Initio Molecular Dynamics (data files)

critterding (1.0-beta12.1-1.2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.0-beta12.1-1.1 [sparc64], 1.0-beta12.1-1 [hppa, powerpcspe])

Evolving Artificial Life

ctsim (5.2.0-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.2.0-1 [hppa, powerpcspe], 4.5.5-1 [m68k])

Computed tomography simulator

ctsim-help (5.2.0-1.1)

Online help file for CTSim

cufflinks (1.3.0-2) [non-free]

Transcript assembly, differential expression and regulation for RNA-Seq

dans-gdal-scripts (0.18-1.1+b2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.18-1.1 [sh4, sparc64], 0.18-1 [hppa])

GDAL contributed tools by Geographic Information Network of Alaska

dcmtk (3.6.0-11 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 3.6.0-10 [sh4, sparc64], 3.6.0-8 [powerpcspe], 3.6.0-3 [hppa], 3.5.4-4 [avr32], 3.5.4-3 [m68k])

OFFIS DICOM toolkit command line utilities

dialign (2.2.1-5+b1 [hurd-i386], 2.2.1-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 2.2.1-3 [avr32, m68k])

Segment-based multiple sequence alignment

dialign-tx (1.0.2-2+b1 [hurd-i386], 1.0.2-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.0.2-1 [avr32, m68k])

Segment-based multiple sequence alignment

dialign-tx-data (1.0.2-2)

Common data files for dialign-tx

dicomnifti (2.30.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.28.16-1 [powerpcspe], 2.28.15-1 [hppa], 2.28.14-1 [avr32, m68k])

converts DICOM files into the NIfTI format

dicompyler (0.4.1-1-1)

radiation therapy research platform

diet-agent (2.8.0-1+b1)

DIET grid middleware - agent

dimbl (0.11-1+b1 [hurd-i386], 0.11-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.9-1 [powerpcspe])

Distributed Memory Based Learner

disulfinder (1.2.11-2+b2 [hurd-i386], 1.2.11-2+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.2.11-2 [powerpcspe, sh4, sparc64])

cysteines disulfide bonding state and connectivity predictor

disulfinder-data (1.2.11-2)

data files for predictor of disulfide bonds in proteins

dotur (1.53-2+b1 [hurd-i386], 1.53-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.53-1 [powerpcspe])

distance based OTU and richness estimation

dozzaqueux (3.21-4)

simulator for chemical mixtures

dozzaqueux-data (3.21-4)

databases for chemical mixtures

drawmap (2.5-3+b100 [powerpcspe], 2.5-3+b1 [hurd-i386], 2.5-3 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

draws customized maps, using raw USGS data files

drawxtl (5.5-1+b1 [hurd-i386], 5.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 5.4+dfsg-5 [hppa])

crystal structure viewer

drslib (0.3.0a3-3)

Command-line tools for the Data Reference Syntax library

dsdp (5.8-9.1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 5.8-9 [powerpcspe, sparc64], 5.8-8 [avr32, hppa], 5.8-6 [m68k])

Software for Semidefinite Programming

dssp (2.0.4-2)

protein secondary structure assignment based on 3D structure

dx (1:4.4.4-4+b3 [alpha], 1:4.4.4-4+b2 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1:4.4.4-4 [sparc64], 1:4.4.4-3+b1 [hppa], 1:4.4.4-2 [m68k])

OpenDX (IBM Visualization Data Explorer) - main package

dxsamples (4.2.0-1)

Sample programs for the OpenDX Data Explorer

e00compr (1.0.1-2+b1 [hurd-i386], 1.0.1-2 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.0.1-1 [avr32, m68k])

A program to read/write Arcinfo compressed E00 files

easychem (0.6-7 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.6-6+b100 [powerpcspe], 0.6-6 [avr32, hppa, sparc64], 0.6-5 [m68k])

Draw high-quality molecules and 2D chemical formulas

ecaccess (4.0.0-2)

clients to access ECMWF facilities

ecs (2.0.1-2)

Code_Saturne Preprocessor

edfbrowser (1.47-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.38-1 [powerpcspe], 1.30-1 [hppa], 1.18-1 [avr32])

viewer for biosignal storage files such as bdf and edf

eficas (6.4.0-1-1.1)

Graphical editor for Code Aster command files

elastix (4.5-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 4.4-2 [hppa])

toolbox for rigid and nonrigid registration of images

elki (0.5.0~beta2-1)

Data mining algorithm development framework

elmer (6.1.0.svn.5396.dfsg-5.2 [alpha, amd64, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 6.1.0.svn.5396.dfsg-5 [armel, armhf, sh4], 5.5.0.svn.4499.dfsg-1 [hppa])

finite element multiphysics suite - binaries

elmer-common (6.1.0.svn.5396.dfsg-5.2)

finite element multiphysics suite - architecture-independent files

elmergui-samples (6.1.0.svn.5396.dfsg-5.2)

ElmerGUI samples directory

embassy-domainatrix (0.1.0+20100721-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.1.0+20100721-2 [hppa], 0.1.0+20090715-1 [avr32], 0.1.0-1 [m68k])

Extra EMBOSS commands to handle domain classification file

embassy-domalign (0.1.0+20100721-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.1.0+20100721-2 [hppa], 0.1.0+20090715-1 [avr32], 0.1.0-1 [m68k])

Extra EMBOSS commands for protein domain alignment

embassy-domsearch (0.1.0++20100721-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.1.0++20100721-2 [hppa], 0.1.0+20980715-1 [avr32])

Extra EMBOSS commands to search for protein domains

embassy-phylip (3.69+20100721-3) [non-free]

EMBOSS conversions of the programs in the phylip package

emboss (6.3.1-6+b1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 6.3.1-6 [armhf, hppa, powerpcspe, s390x, sh4, sparc64], 6.2.0-1 [avr32], 5.0.0-7 [m68k])

the european molecular biology open software suite

emboss-data (6.3.1-6)

data files for the EMBOSS package

emboss-explorer (2.2.0-7)

web-based GUI to EMBOSS

emboss-lib (6.3.1-6+b1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 6.3.1-6 [armhf, hppa, powerpcspe, s390x, sh4, sparc64], 6.2.0-1 [avr32], 5.0.0-7 [m68k])

EMBOSS Libraries

engauge-digitizer (5.0-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 5.0-2 [sparc64], 4.1-2 [avr32, hppa, m68k, powerpcspe])

interactively extracts numbers from bitmap graphs or maps

ent (1.1debian-1.1+b1 [hurd-i386], 1.1debian-1.1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.1debian-1 [avr32, m68k])

pseudorandom number sequence test program

epigrass (2.0.4-3)

scientific tool for simulations and scenario analysis in network epidemiology

epsilon-bin (0.9.1-2+b1 [hurd-i386], 0.9.1-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.8.1-1 [hppa])

A library for wavelet image compression - tools

esorex (3.9.0-1+b1 [mips, mipsel, s390x], 3.9.0-1 [alpha, amd64, armhf, i386, powerpc, s390, sh4])

Execution Tool for European Southern Observatory pipelines

esys-particle (2.1-4+b1 [hurd-i386], 2.1-4 [alpha, amd64, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sparc], 2.1-3 [mipsel], 2.1-2 [sh4])

Software for particle-based numerical modelling. MPI version.

etsf-io (1.0.3-4+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.0.3-4 [sparc64], 1.0.3-3 [hppa])

Binary tools to check, merge and read ETSF files

exonerate (2.2.0-6+b1 [hurd-i386], 2.2.0-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.2.0-2+b100 [powerpcspe], 2.2.0-2 [hppa], 2.2.0-1 [m68k])

generic tool for pairwise sequence comparison

expeyes (2.0.0-3)

hardware & software framework for developing science experiments

extrema (4.4.5.dfsg-3+b1 [hurd-i386], 4.4.5.dfsg-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.4.5.dfsg-2 [powerpcspe], 4.4.5.dfsg-1 [hppa], 4.3.6-1 [m68k])

powerful visualization and data analysis tool

fastdnaml (1.2.2-10+b1 [hurd-i386], 1.2.2-10 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2.2-9+b100 [powerpcspe], 1.2.2-9 [avr32, hppa], 1.2.2-8 [m68k])

Tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix95-3+b1 [hurd-i386], 4.1P-fix95-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.1P-fix95-2 [hppa, powerpcspe], 4.1P-fix95-1 [avr32, m68k])

faster version of pedigree programs of Linkage

fastx-toolkit (0.0.13.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.0.13.1-2 [sparc64], 0.0.13.1-1 [powerpcspe])

FASTQ/A short nucleotide reads pre-processing tools

feel++-apps (0.91.4-2)

A library for the finite element method

ffindex (0.9.3-2)

simple index/database for huge amounts of small files

figtree (1.3.1-1)

graphical phylogenetic tree viewer

filo (1.1+2011020401.2+b1 [hurd-i386], 1.1+2011020401.2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

FILe and stream Operations

fityk (0.9.8-3+b2 [hurd-i386], 0.9.8-3+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.9.8-3 [sh4, sparc64], 0.9.7-1 [hppa, powerpcspe], 0.8.8-1 [m68k])

general-purpose nonlinear curve fitting and data analysis

freecad (0.12.5284-dfsg-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.10.3247.dfsg-2 [hppa, powerpcspe])

Extensible Open Source CAx program (alpha)

freediams (0.7.1-1 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.5.4-1 [hppa])

Pharmaceutical drugs prescriptor and interactions checker

freediams-data (0.5.4-1)

Data for pharmaceutical drugs prescriptor and interactions checker FreeDiams

freemedforms-common-resources (0.7.1-1)

Common data for the FreeMedForms project

freemedforms-emr (0.7.1-1)

Electronic Medical Record Manager

freemedforms-emr-resources (0.7.1-1)

Data for the FreeMedForms EMR

freemedforms-freedata (0.7.1-1)

Free extra-data for the FreeMedForms project

freemedforms-i18n (0.7.1-1)

Translations of the FreeMedForms project

freemedforms-libs (0.7.1-1)

Common libs for the FreeMedForms project

freemedforms-project (0.7.1-1)

FreeMedForms project

freemedforms-theme (0.7.1-1)

Theme for the FreeMedForms project

frog (0.12.9-3+b1 [amd64, hurd-i386], 0.12.9-3 [alpha, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

tagger and parser for Dutch language

fsl (4.1.9-5) [non-free]

Metapackage for the latest version of FSL

fsl-4.1 (4.1.9-5 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x], 4.1.9-4+b1 [armhf, mipsel, sparc]) [non-free]

analysis tools for FMRI, MRI and DTI brain imaging

fslview (3.1.8+4.1.6-2 [alpha, hppa], 3.0.2+4.1.2-2 [m68k])

viewer for (f)MRI and DTI data

funtools (1.4.4-2+b1 [hurd-i386], 1.4.4-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Minimal buy-in FITS utility package

fxt-tools (0.2.6-1+b1 [hurd-i386], 0.2.6-1 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc])

Multithreaded tracing library

g3data (1:1.5.3-2+b100 [powerpcspe], 1:1.5.3-2+b1 [hurd-i386], 1:1.5.3-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1:1.5.3-1 [m68k])

extract data from scanned graphs

gabedit (2.4.2-1+b1 [hurd-i386], 2.4.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.3.7-1 [powerpcspe], 2.3.5-1 [hppa], 2.1.19-1 [m68k])

graphical user interface to Ab Initio packages

gamgi (0.15.7-1+b1 [hurd-i386], 0.15.7-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.15.6-1 [sparc64], 0.15.3-1 [powerpcspe], 0.15.1-1 [hppa], 0.13.10-1 [m68k])

General Atomistic Modelling Graphic Interface (GAMGI)

gamgi-data (0.15.7-1)

General Atomistic Modelling Graphic Interface (data)

garlic (1.6-1.1+b1 [hurd-i386], 1.6-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.6-1+b100 [powerpcspe], 1.6-1 [avr32, hppa, m68k])

A visualization program for biomolecules

gassst (1.28-1)

Global alignment short sequence search tool

gausssum (2.2.5-2)

parse and display Gaussian, GAMESS, and etc's output

gbrowse (2.48~dfsg-1)

GMOD Generic Genome Browser

gbrowse-calign (2.48~dfsg-1+b1 [hurd-i386], 2.48~dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.26~dfsg-3 [powerpcspe])

CAlign helper

gbrowse-data (2.48~dfsg-1)

Sample data to use GBrowse

gchempaint (0.12.11-1+b1 [hurd-i386], 0.12.11-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.12.8-1 [sh4, sparc64], 0.12.7-2 [powerpcspe], 0.12.7-1 [hppa], 0.10.4-1 [m68k])

2D chemical structures editor for the GNOME2 desktop

gcrystal (0.12.11-1+b1 [hurd-i386], 0.12.11-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.12.8-1 [sh4, sparc64], 0.12.7-2 [powerpcspe], 0.12.7-1 [hppa], 0.10.4-1 [m68k])

lightweight crystal structures visualizer

gcu-bin (0.12.11-1+b1 [hurd-i386], 0.12.11-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.12.8-1 [sh4, sparc64], 0.12.7-2 [powerpcspe], 0.12.7-1 [hppa], 0.10.4-1 [m68k])

GNOME chemistry utils (helper applications)

gcu-plugin (0.12.11-1+b1 [hurd-i386], 0.12.11-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.12.8-1 [sh4, sparc64], 0.12.7-2 [powerpcspe], 0.12.7-1 [hppa], 0.10.4-1 [m68k])

GNOME chemistry utils (browser plugin)

gcx (1.3-1.1+b1 [hurd-i386], 1.3-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.3-1+b100 [powerpcspe], 1.3-1 [avr32, hppa], 1.1-1 [m68k])

astronomical image processing and photometry gtk+ application

gdal-bin (1.9.0-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.7.3-6+b4 [sparc64], 1.7.3-2 [hppa], 1.5.4-2 [m68k])

Geospatial Data Abstraction Library - Utility programs

gdis (0.90-4 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.90-3 [hppa, powerpcspe, sparc64], 0.90-1 [m68k])

molecular and crystal model viewer

gdis-data (0.90-4)

molecular and crystal model viewer (data files)

gdpc (2.2.5-2+b1 [hurd-i386], 2.2.5-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.2.5-1+b100 [powerpcspe], 2.2.5-1 [avr32, hppa], 2.2.4-3 [m68k])

visualiser of molecular dynamic simulations

gdpc-examples (2.2.5-2)

example files for the gdpc program

geant321 (1:3.21.14.dfsg-9)

[Physics] Particle detector description and simulation tool

geant321-data (1:3.21.14.dfsg-9)

[Physics] Data for GEANT 3.21 detector simulator

gelemental (1.2.0-8 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.0-7 [sparc64], 1.2.0-6 [hppa, powerpcspe], 1.2.0-4 [avr32], 1.2.0-3 [m68k])

Periodic Table viewer

genesis (2.2.1-12+b1 [alpha, hppa], 2.2.1-12 [m68k])

general-purpose neural simulator

gentle (1.9+cvs20100605+dfsg-3+b1 [hurd-i386], 1.9+cvs20100605+dfsg-3 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.9+cvs20100605+dfsg-2 [alpha, hppa]) [contrib]

suite to plan genetic cloning

geographiclib-tools (1.21-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.8-2 [powerpcspe], 1.8-1 [hppa])

A C++ library to solve some geodesic problems -- tools

geotiff-bin (1.3.0+dfsg-3+b1 [hurd-i386], 1.3.0+dfsg-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2.5-1+b100 [powerpcspe], 1.2.5-1 [avr32, hppa, m68k])

the GeoTIFF library -- tools

gerris (20110329-dfsg.2-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 20091109-dfsg.1-1 [hppa], 0.9.2+darcs081022-dfsg.1-5 [m68k])

Gerris Flow Solver

gerris-mpi (20110329-dfsg.2-1)

Gerris Flow Solver

getdata (0.1-1)

management of external databases

gff2aplot (2.0-7 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.0-6 [hppa, powerpcspe], 2.0-5 [avr32, m68k])

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98d-4)

produces PostScript graphical output from GFF-files

ghkl (4.0.3-4+b1 [hurd-i386], 4.0.3-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc, sparc64], 4.0.3-2 [hppa, powerpcspe], 4.0.3-1 [avr32])

diffractometer computation control application

ginkgocadx (2.12.0.4889-1)

Medical Imaging Software and complete DICOM Viewer

glam2 (1064-1+b1 [hurd-i386], 1064-1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

gapped protein motifs from unaligned sequences

gliese (3.0.95-2) [non-free]

stellar data set from the Third Catalogue of Nearby Stars

gmap (2011-12-28-1) [non-free]

spliced and SNP-tolerant alignment for mRNA and short reads

gmt (4.5.7-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 4.5.6-1 [hppa, sparc64], 4.4.0-1 [m68k])

Generic Mapping Tools

gofigure2 (0.9.0-1+b2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-1+b1 [armhf, s390x])

Tool for visualizing, processing and analysing of bioimages

gperiodic (2.0.10-7 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.0.10-5+b100 [powerpcspe], 2.0.10-5 [avr32, hppa, m68k, sparc64])

periodic table application

gpiv (0.6.1-2+b2 [hurd-i386], 0.6.1-2+b1 [armel, mips, mipsel, s390, sparc], 0.6.1-2 [alpha, amd64, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, s390x, sh4, sparc64], 0.5.2-3 [m68k])

GUI program for Particle Image Velocimetry

gpiv-mpi (0.6.1-2+b2 [hurd-i386], 0.6.1-2+b1 [armel, mips, mipsel, s390, sparc], 0.6.1-2 [alpha, amd64, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, s390x, sh4, sparc64])

GUI program for Particle Image Velocimetry - MPI version

gpivtools (0.6.0-3+b1 [hurd-i386], 0.6.0-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.6.0-1 [hppa, m68k, powerpcspe])

command line programs for Particle Image Velocimetry

gpivtools-mpi (0.6.0-3+b1 [hurd-i386], 0.6.0-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.6.0-1 [hppa, m68k, powerpcspe])

command line programs for Particle Image Velocimetry - MPI version

gpx2shp (0.69-3+b100 [powerpcspe], 0.69-3+b1 [hurd-i386], 0.69-3 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

convert GPS or GPX file to ESRI Shape file

grass (6.4.2-1 [all], 6.4.1-2.1 [alpha, sh4], 6.4.0-2 [hppa], 6.4.0~rc3-3 [m68k])

Geographic Resources Analysis Support System (GRASS GIS)

grass-core (6.4.2-1)

GRASS GIS core components

grass-gui (6.4.2-1)

GRASS GIS graphical user interfaces

gri (2.12.23-2.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.12.23-2 [sparc64], 2.12.22-1 [hppa], 2.12.18-1 [m68k])

a language for scientific illustration

grinder (0.4.5-1)

Versatile omics shotgun and amplicon sequencing read simulator

gromacs (4.5.5-1+b1 [hurd-i386], 4.5.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 4.5.4-2 [powerpcspe], 4.5.4-1 [hppa], 4.0.4-1 [m68k])

Molecular dynamics simulator, with building and analysis tools

gromacs-data (4.5.5-1)

GROMACS molecular dynamics sim, data and documentation

gromacs-lam (4.0.4-1) [debports]

Molecular dynamics sim, binaries for LAM-MPI parallelization

gromacs-mpich (4.5.5-1+b1 [hurd-i386], 4.5.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 4.5.4-2 [powerpcspe], 4.5.4-1 [hppa], 4.0.4-1 [m68k])

Molecular dynamics sim, binaries for MPICH parallelization

gromacs-openmpi (4.5.5-1+b1 [hurd-i386], 4.5.5-1 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc])

Molecular dynamics sim, binaries for OpenMPI parallelization

gvb (1.2.1-1)

visual simulator of 1 and 2-dimensional vibrations

gwyddion (2.28-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.25-2 [sparc64], 2.24-1 [powerpcspe], 2.23-1 [hppa], 2.13-1 [m68k])

Scanning Probe Microscopy visualization and analysis tool

gwyddion-common (2.28-2)

architecture-independent files for Gwyddion SPM analysis tool

gwyddion-plugins (2.28-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.25-2 [sparc64], 2.24-1 [powerpcspe], 2.23-1 [hppa], 2.13-1 [m68k])

plugins for Gwyddion SPM analysis tool

h5utils (1.12.1-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.12.1-1 [hppa, powerpcspe, sparc64], 1.10-7+b1 [m68k])

HDF5 files visualization tools

harminv (1.3.1-8+b1 [hurd-i386], 1.3.1-8 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.3.1-7 [hppa, powerpcspe], 1.3.1-3 [avr32], 1.3.1-2 [m68k])

extraction of complex frequencies and amplitudes from time series

hdf5-helpers (1.8.8-9+b1 [hurd-i386], 1.8.8-9 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

Hierarchical Data Format 5 (HDF5) - Helper tools

hdf5-tools (1.8.8-9+b1 [hurd-i386], 1.8.8-9 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.8.4-patch1-3 [powerpcspe], 1.8.4-patch1-2 [hppa], 1.6.6-4 [m68k])

Hierarchical Data Format 5 (HDF5) - Runtime tools

hhsuite (2.0.14-1)

sensitive protein sequence searching based on HMM-HMM alignment

hhsuite-data (2.0.14-1)

sensitive protein sequence searching based on HMM-HMM alignment (data)

hmmer (3.0-4+b1 [hurd-i386], 3.0-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.0-3 [hppa, powerpcspe], 2.3.2-5 [m68k])

profile hidden Markov models for protein sequence analysis

hmmer-pvm (2.3.2-5) [debports]

HMMER programs with PVM (Parallel Virtual Machine) support

hodie (1.5-1+b1 [hurd-i386], 1.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.4-8 [avr32, hppa, m68k])

prints the date in latin

horae (071~svn536-1) [contrib]

interactive graphical processing and analysis of EXAFS data

hpcc (1.4.1-2+b1 [armel, hurd-i386, mips, mipsel, s390, sparc], 1.4.1-2 [alpha, amd64, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, s390x])

HPC Challenge benchmark

ics (1.4.0-2) [debports]

Code_Saturne Graphical User Interface

ifeffit (2:1.2.11d-8+b1 [hurd-i386, sparc], 2:1.2.11d-8 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x], 2:1.2.11d-6 [alpha, hppa]) [contrib]

Interactive XAFS analysis program

ifrit (3.3.4-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 3.3.4-2+b2 [sh4], 3.3.4-2 [sparc64], 3.3.4-1 [hppa], 3.2.5-1 [m68k])

powerful tool for visualizing 3-dimensional data sets

igv (2.0.30-1) [non-free]

Integrative Genomics Viewer

imagej (1.46a-1)

Image processing program inspired by NIH Image for the Macintosh

imagevis3d (2.0.1-5)

desktop volume rendering application for large data

imview (1.1.9c-8+b1 [alpha, armel, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.1.9c-8 [amd64, armhf], 1.1.9c-7 [hppa, powerpcspe], 1.1.9c-3 [m68k])

Image viewing and analysis application

indi (4:3.5.9-2) [debports]

Instrument Neutral Distributed Interface for astronomical devices

indigo-utils (1.0.0-2 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sparc], 1.0.0-1 [sh4])

Organic Chemistry Toolkit Utilities

infernal (1.0.2-2+b1 [hurd-i386], 1.0.2-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.2-1+b101 [powerpcspe], 1.0.2-1 [avr32, hppa])

inference of RNA secondary structural alignments

israndom (1.0.7-4 [armhf], 1.0.7-3 [alpha, avr32, hppa, m68k]) [debports]

nonclassical randomness test using data compressors

itksnap (2.2.0-1.1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 2.0.0+cvs20100615-1+b1 [hppa])

semi-automatic segmentation of structures in 3D images

jalview (2.7.dfsg-2)

multiple alignment editor

jblas (1.2.0-3 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.0-2 [powerpcspe])

fast linear algebra library for Java

jellyfish (1.1.5-1)

count k-mers in DNA sequences

jemboss (6.3.1-6)

graphical user interface to EMBOSS

jmol (12.2.18+dfsg-1)

Molecular Viewer

kalign (1:2.03+20110620-2+b1 [hurd-i386], 1:2.03+20110620-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1:2.03+20110620-1 [powerpcspe], 2.04-2 [avr32, hppa], 2.04-1 [m68k])

Global and progressive multiple sequence alignment

kalzium (4:4.7.4-2+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 4:4.7.4-2 [sh4], 4:4.4.5-2 [hppa], 4:3.5.9-2 [m68k])

periodic table and chemistry tools for KDE

kalzium-data (4:4.7.4-2)

data files for Kalzium

klustakwik (2.0.1-1+b1 [hurd-i386], 2.0.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

automatic sorting of the samples (spikes) into clusters

kst (2.0.3-1.1+b2 [hurd-i386], 2.0.3-1.1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.0.3-1.1 [sparc64])

scientific data plotting tool

kst-data (2.0.3-1.1)

set of data files for kst

kstars (4:4.7.4-2+b2 [hurd-i386], 4:4.7.4-2+b1 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 4:4.7.4-2 [alpha], 4:4.4.5-2 [hppa], 4:3.5.9-2 [m68k])

desktop planetarium for KDE

kstars-data (4:4.7.4-2)

data files for KStars desktop planetarium

kstars-data-extra-tycho2 (1.1r1-5.1)

Tycho-2 star catalog for KStars

kxterm (20061220+dfsg3-2 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, powerpcspe, s390, sh4, sparc], 2006.dfsg.2-2 [m68k])

CERNLIB data analysis suite - KUIP terminal emulator

lammps (0~20120426.git67de404-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0~20120305.git5d7feb1-1 [hurd-i386, sh4])

Molecular Dynamics Simulator.

last-align (199-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 178-1 [powerpcspe], 159-1 [hppa], 102-1 [avr32], 58-1 [m68k])

genome-scale comparison of biological sequences

lbt (1.2.2-5+b1 [hurd-i386], 1.2.2-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.2.2-4 [avr32, hppa], 1.2.2-3 [m68k])

converts from LTL formulas to Büchi automata

lhapdf-pdfsets-minimal (5.8.7-2)

Minimal PDF Sets of LHAPDF

libarb (5.3-3) [non-free]

Integrated package for sequence database handling and analysis

libball1.4 (1.4.1+20111206-3+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.4.1+20111206-3+b1 [sh4], 1.4.1+20111206-3 [sparc64], 1.4.0-4 [powerpcspe])

Biochemical Algorithms Library

libball1.4-data (1.4.1+20111206-3)

Biochemical Algorithms Library

libballview1.4 (1.4.1+20111206-3+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.4.1+20111206-3+b1 [sh4], 1.4.1+20111206-3 [sparc64], 1.4.0-4 [powerpcspe])

Biochemical Algorithms Library, VIEW framework

libbiojava-java (1:1.7.1-2)

Java API to biological data and applications (default version)

libbiojava-java-demos (1:1.7.1-2)

Example programs for BioJava

libbiojava1.7-java (1:1.7.1-2)

Java API to biological data and applications (version 1.7)

libclassad3 (7.8.0~dfsg.1-1)

Condor classads expression language - runtime library

libclhep2.1 (2.1.2.2-1)

CLHEP: A Class Library for High Energy Physics

libclinica0 (0.2.1~dfsg-1+b1 [hurd-i386], 0.2.1~dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Simple medical records manager (shared library)

libgeotiff-epsg (1.3.0-1) [non-free]

the GeoTIFF library -- EPSG Geodetic Parameter Dataset

libghemical-data (3.0.0-2)

Molecular Modelling Library (data files)

libgofigure0 (0.9.0-1+b2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-1+b1 [armhf, s390x])

Tool for visualizing, processing and analysing of bioimages

libgpib-bin (3.2.11-2.1+b1 [alpha], 3.2.11-2.1 [hppa], 3.2.11-2 [avr32, m68k])

libgpib support applications and configuration

libgrib-api-data (1.8.0.1-1)

grib_api definition files

libgrits2 (0.6-1) [debports]

Grits is a Virtual Globe library

libgrits4 (0.7-1+b1 [hurd-i386], 0.7-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Grits is a Virtual Globe library

liblas-bin (1.2.1-5+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.2.1-5 [sh4], 1.2.1-4 [sparc64], 1.2.1-2 [hppa])

ASPRS LiDAR data translation toolset

liblinear-tools (1.8+dfsg-1+b1 [hurd-i386], 1.8+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.7+dfsg-1 [hppa])

Standalone applications for LIBLINEAR

libocas-tools (0.93-1+b1 [hurd-i386, powerpcspe], 0.93-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

Standalone applications implementing the OCAS solver

libopenmeeg1 (2.0.0.dfsg-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel], 2.0.0.dfsg-2+b1 [mips, powerpc, s390, sparc])

library for solving EEG and MEG forward and inverse problems

libqgis1.4.0 (1.4.0+12730-6 [hppa], 1.4.0+12730-5 [alpha])

Quantum GIS - shared libraries

libqgis1.7.5 (1.7.4+1.7.5~20120320-1.1)

Quantum GIS - shared libraries

librsl1 (1.42-2+b1 [hurd-i386], 1.42-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.42-1 [powerpcspe])

TRMM Radar Software Library

libsilo-bin (4.8-11+b1 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4, sparc], 4.8-11 [armhf, s390x, sparc64], 4.8-3 [powerpcspe], 4.8-1 [hppa])

Utilities to manipulate libsilo files

libstxxl1 (1.3.1-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.3.1-2 [sparc64], 1.3.1-1 [powerpcspe], 1.3.0-1 [hppa], 1.2.1-3 [avr32])

C++ STL drop-in replacement for extremely large datasets

libxy-bin (0.8-1+b2 [hurd-i386], 0.8-1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.8-1 [hppa, powerpcspe, sh4, sparc64], 0.6-1 [avr32])

xylib - utilities

liggghts (1.5.3-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.5.1-5 [sh4, sparc64])

Open Source DEM Particle Simulation Software.

lipsia (1.6.0-4)

analysis suite for MRI and fMRI data

logcentral (2.7-1+b1 [hurd-i386], 2.7-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Logging service for distributed applications

logcentral-tools (2.7-1+b1 [hurd-i386], 2.7-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Logging service for distributed applications

loki (2.4.7.4-4+b100 [powerpcspe], 2.4.7.4-4+b1 [hurd-i386], 2.4.7.4-4 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

MCMC linkage analysis on general pedigrees

lutefisk (1.0.5a.cleaned-1+b100 [powerpcspe], 1.0.5a.cleaned-1+b1 [hurd-i386], 1.0.5a.cleaned-1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

de novo interpretation of peptide CID spectra

mafft (6.864-1+b1 [hurd-i386], 6.864-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.859-1 [powerpcspe], 6.850-1 [hppa], 6.717-1 [avr32], 6.240-2 [m68k])

Multiple alignment program for amino acid or nucleotide sequences

maq (0.7.1-5+b1 [hurd-i386], 0.7.1-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.7.1-4 [hppa, powerpcspe], 0.7.1-3 [avr32, m68k])

maps short fixed-length polymorphic DNA sequence reads to reference sequences

maqview (0.2.5-3 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2.5-1 [powerpcspe])

graphical read alignment viewer for short gene sequences

massxpert (3.2.2-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.2.0-2 [sparc64], 3.1.0-1 [powerpcspe], 2.4.3-1 [hppa])

linear polymer mass spectrometry software

massxpert-data (3.2.2-1)

linear polymer mass spectrometry software - arch-indep data

matlab-gdf (0.1.2-2) [contrib]

IO library for the GDF -- Matlab interface

maude (2.6-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.6-1 [powerpcspe])

high-performance logical framework

mayavi2 (4.1.0-1+b1 [hurd-i386], 4.1.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 4.0.0-3+b1 [sh4], 4.0.0-2 [sparc64], 3.3.2-3 [hppa], 3.1.0-1 [m68k])

scientific visualization package for 2-D and 3-D data

mbt (3.2.8-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.2.7-3 [alpha, sparc64], 3.2.5-3.1 [powerpcspe])

memory-based tagger-generator and tagger

mbtserver (0.5-2+b1 [hurd-i386], 0.5-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2-1 [powerpcspe])

Server extensions for the MBT tagger

meep (1.1.1-8+b1 [hurd-i386], 1.1.1-8 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.1.1-7 [armhf], 1.1.1-6 [hppa, powerpcspe], 0.10-2+b1 [m68k])

software package for FDTD simulation

meep-mpi (1.1.1-7 [armhf], 1.1.1-6+b1 [alpha], 1.1.1-6 [hppa, powerpcspe], 0.10-2+b1 [m68k]) [debports]

software package for FDTD simulation, parallel (mpich) version

meep-mpich (1.1.1-11 [armhf], 1.1.1-9+b1 [alpha], 1.1.1-9 [hppa]) [debports]

software package for FDTD simulation, parallel (mpich) version

meep-openmpi (1.1.1-8+b1 [alpha, amd64, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 1.1.1-8 [armel])

software package for FDTD simulation, parallel (OpenMPI) version

melting (4.3c-2+b1 [hurd-i386], 4.3c-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, s390x, sh4, sparc, sparc64], 4.3c-1+b100 [powerpcspe], 4.3c-1 [avr32, hppa, powerpc], 4.2h-3 [m68k])

compute the melting temperature of nucleic acid duplex

melting-gui (4.3c-2)

graphical interface to compute the melting temperature of nucleic acid duplex

merkaartor (0.17.2-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sh4, sparc], 0.17.2-6 [mipsel], 0.17.2-5 [sparc64], 0.17.2-3 [hppa], 0.12-1 [m68k])

map editor for OpenStreetMap.org

mgltools-bhtree (1.5.6~rc3~cvs.20120206-1+b1 [hurd-i386], 1.5.6~rc3~cvs.20120206-1 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.5.4.cvs.20090603-1 [alpha]) [non-free]

Bhtree library extension module

mgltools-cadd (1.5.6~rc3~cvs.20120206-1) [non-free]

Computer Aided Drug Discovery (CADD) Pipeline

mgltools-dejavu (1.5.6~rc3~cvs.20120206-1) [non-free]

visualization of 3D geometry using the OpenGL with Python

mgltools-geomutils (1.5.6~rc3~cvs.20120601-1 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x], 1.5.6~rc3~cvs.20120206-1 [armhf, mipsel, sparc], 1.5.4.cvs.20090603-1 [alpha, hppa]) [non-free]

Python library for geometric analyses

mgltools-mglutil (1.5.6~rc3~cvs.20120206-1) [non-free]

Molecular Graphics Laboratory utility collection

mgltools-molkit (1.5.6~rc3~cvs.20120206-1) [non-free]

Python classes to read and manipulate molecules

mgltools-networkeditor (1.5.6~rc3~cvs.20120206-1) [non-free]

Python GUI library for the editing of networks

mgltools-opengltk (1.5.6~rc3~cvs.20120601-1 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x], 1.5.6~rc3~cvs.20120206-1 [armhf, mipsel, sparc], 1.5.4.cvs.20090603-1.1 [hppa], 1.5.4.cvs.20090603-1 [alpha]) [non-free]

Opengltk Python extension

mgltools-pmv (1.5.6~rc3~cvs.20120206-1) [non-free]

Python-based Molecular Viewer

mgltools-pmv-test (1.5.6~rc3~cvs.20120206-1) [non-free]

Python-based Molecular Viewer (functionality tests)

mgltools-pyautodock (1.5.6~rc3~cvs.20120206-1) [non-free]

Python implementation of autodock

mgltools-pybabel (1.5.6~rc3~cvs.20120206-1) [non-free]

molecular structure file access and interpretation

mgltools-pyglf (1.5.6~rc3~cvs.20120601-1 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x], 1.5.6~rc3~cvs.20120206-1 [armhf, mipsel, sparc], 1.5.4.cvs.20090603-1.1 [hppa], 1.5.4.cvs.20090603-1 [alpha]) [non-free]

GLF library Python extension to write text in OpenGL

mgltools-scenario (1.5.4.cvs.20090514-1) [non-free]

Python-based viewer of molecular structures

mgltools-scenario2 (1.5.6~rc3~cvs.20120206-1) [non-free]

Python-based viewer of molecular structures

mgltools-sff (1.5.6~rc3~cvs.20120601-1 [amd64], 1.5.6~rc3~cvs.20120206-1+b1 [hurd-i386], 1.5.6~rc3~cvs.20120206-1 [armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sparc], 1.5.4.cvs.20090603-1 [alpha]) [non-free]

Simple Force Field for Python

mgltools-support (1.5.6~rc3~cvs.20120206-1) [non-free]

Update mechanism of MGLTools

mgltools-symserv (1.5.6~rc3~cvs.20120206-1) [non-free]

Symetry server

mgltools-utpackages (1.5.6~rc3~cvs.20120601-1 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x], 1.5.6~rc3~cvs.20120206-1 [armhf, mipsel, sparc], 1.5.4.cvs.20090603-1 [alpha, hppa]) [non-free]

UT Austin software Python extensions

mgltools-viewerframework (1.5.6~rc3~cvs.20120206-2) [non-free]

ViewerFramework supports building visualization applications

mgltools-vision (1.5.6~rc3~cvs.20120601-1) [non-free]

Python-based Visual Programming Environment

mgltools-visionlibraries (1.5.6~rc3~cvs.20120601-1) [non-free]

Extensions for Python-based Visual Programming Environment

mgltools-volume (1.5.6~rc3~cvs.20120206-1) [non-free]

Volume rendering Python package

mgltools-webservices (1.5.6~rc3~cvs.20120206-1) [non-free]

webservices for components of autodocktools

minc-tools (2.1.10-1+b2 [hurd-i386], 2.1.10-1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.1.00-1 [hppa], 2.0.15-3 [m68k])

MNI medical image format tools

minisat (1:2.2.1-3+b1 [hurd-i386], 1:2.2.1-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1:2.2.1-1 [hppa])

Fast and lightweight SAT solver

minisat+ (1.0-2+b1 [hurd-i386], 1.0-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

solver for pseudo-Boolean constraints

minisat2 (1:2.2.1-3+b1 [hurd-i386], 1:2.2.1-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1:2.2.1-1 [hppa], 070721-8 [avr32], 070721-6 [m68k])

Transitional package for minisat

minisat2

virtual package provided by minisat

mipe (1.1-4)

Tools to store PCR-derived data

mira-assembler (3.4.0.1-3)

Whole Genome Shotgun and EST Sequence Assembler

mira-examples (3.4.0.1-3)

files to experiment with the mira assembler

mitools (1.8.5-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.8.4-1 [armhf, sh4], 1.8.1-3 [sparc64])

view, convert and perform basic maths with medical image datasets

mlv-smile (1.47-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.47-1 [powerpcspe])

Find statistically significant patterns in sequences

mmass (5.1.0-1)

Mass spectrometry tool for proteomics

mmass-modules (5.1.0-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 5.0.1-1 [sparc64], 3.12.1-1 [powerpcspe])

Mass spectrometry tool for proteomics - extension modules

mn-fit (5.13-4) [debports]

interactive analysis package for fitting data and histograms

mobyle (1.0.5~dfsg-2)

Web portal that provides web forms for command-line software

mobyle-programs (3.1-1)

Program descriptions for the mobyle portal

mobyle-utils (1.0.5~dfsg-2 [amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.0.5~dfsg-1 [alpha, armhf])

binary tools used by Mobyle

molphy (2.3b3-5) [non-free]

Program Package for MOLecular PHYlogenetics

mona (1.4-13-3+b1 [hurd-i386], 1.4-13-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 1.4-13-1 [avr32, hppa], 1.4-10-1 [m68k])

theorem prover based on automata

montecarlo-base (20061220+dfsg3-1)

[Physics] Common files for CERNLIB Monte Carlo libraries

montecarlo-data (20061220+dfsg3-1)

[Physics] data for CERNLIB Monte Carlo libraries

mopac7-bin (1.15-5 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.15-4+b100 [powerpcspe], 1.15-4 [avr32, hppa], 1.14-4 [m68k])

Semi-empirical Quantum Chemistry Library (binaries)

morse-simulator (0.5.2-1)

Multi-OpenRobot Simulation Engine

morse-simulator-data (0.5.2-1)

Multi-OpenRobot Simulation Engine

mothur (1.24.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.18.1-1 [powerpcspe])

sequence analysis suite for research on microbiota

mozilla-biofox (1.6-1)

extension of bioinformatics tools to Iceape and Iceweasel browsers

mpb (1.4.2-18+b1 [hurd-i386], 1.4.2-18 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.4.2-16 [hppa, powerpcspe], 1.4.2-13 [m68k])

MIT Photonic-Bands

mpb-mpi (1.4.2-18+b1 [hurd-i386], 1.4.2-18 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.4.2-16 [hppa, powerpcspe], 1.4.2-13 [m68k])

MIT Photonic-Bands, parallel (mpich) version

mpqc (2.3.1-14+b1 [hurd-i386], 2.3.1-14 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 2.3.1-13 [armel, armhf], 2.3.1-11 [sh4, sparc64], 2.3.1-6 [hppa, powerpcspe], 2.3.1-4 [m68k])

Massively Parallel Quantum Chemistry Program

mpqc-openmpi (2.3.1-14 [all], 2.3.1-6 [alpha])

Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)

mpqc-support (2.3.1-14+b1 [hurd-i386], 2.3.1-14 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 2.3.1-13 [armel, armhf], 2.3.1-11 [sh4, sparc64], 2.3.1-6 [hppa, powerpcspe], 2.3.1-4 [m68k])

Massively Parallel Quantum Chemistry Program (support tools)

mrbayes (3.2.1+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.1.2-2 [powerpcspe, sparc64])

Bayesian Inference of Phylogeny

mrbayes-mpi (3.2.1+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.1.2-2 [powerpcspe, sparc64])

Bayesian Inference of Phylogeny - mpi version

mriconvert (2.0.235-1+b1 [hurd-i386], 2.0.235-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 2.0-2 [hppa])

medical image file conversion utility

mricron (0.20120505.1~dfsg.1-1)

magnetic resonance image conversion, viewing and analysis

mricron-data (0.20120505.1~dfsg.1-1)

data files for MRIcron

mrpt-apps (1:0.9.5svn2717-1 [amd64], 1:0.9.5svn2563-1 [alpha, armel, armhf, i386, ia64, mips, mipsel, powerpc, sh4, sparc], 1:0.9.4svn2453-1 [powerpcspe], 1:0.9.1-1 [s390])

Mobile Robot Programming Toolkit - Console and GUI applications

mrpt-libs (1:0.9.5svn2717-1 [amd64], 1:0.9.5svn2563-1 [alpha, armel, armhf, i386, ia64, mips, mipsel, powerpc, sh4, sparc], 1:0.9.4svn2453-1 [powerpcspe], 1:0.9.1-1 [s390])

Mobile Robot Programming Toolkit - All the libraries

mrtrix (0.2.10-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.2.10-1 [sparc64], 0.2.9-1 [powerpcspe], 0.2.8-3 [hppa])

diffusion-weighted MRI white matter tractography

mssstest (3.0-3) [non-free]

Normalisation of disease scores for patients with Multiple Sclerosis

mummer (3.23~dfsg-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.23~dfsg-1 [sparc64], 3.22~dfsg-2+b100 [powerpcspe], 3.22~dfsg-2 [avr32, hppa], 3.20-3 [m68k])

Efficient sequence alignment of full genomes

muscle (1:3.8.31-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.70+fix1-2+b100 [powerpcspe], 3.70+fix1-2 [avr32, hppa, hurd-i386, m68k])

Multiple alignment program of protein sequences

music-bin (1.0.7-1.2 [alpha, amd64, armel, armhf, i386, ia64, powerpc, sparc], 1.0.7-1.1 [sparc64], 1.0.7-1 [powerpcspe])

Multi-Simulation Coordinator for MPI -- Utilities

mustang (3.2.1-3+b1 [hurd-i386], 3.2.1-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.2.1-1+b100 [powerpcspe], 3.2.1-1 [avr32, hppa], 3.0-1 [m68k])

multiple structural alignment of proteins

mustang-testdata (3.2.1-3)

multiple structural alignment of proteins, test data

narval-generic-actors (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (generic actors)

narval-servers (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (servers)

narval-tests-actors (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (tests actors)

narval-utils (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (utils)

nautic (1.3-6+b1 [hurd-i386], 1.3-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

computation of observer position in astro-navigation

ncbi-blast+ (2.2.26-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.2.25-5 [powerpcspe])

next generation suite of BLAST sequence search tools

ncbi-blast+-legacy (2.2.26-3)

NCBI Blast legacy call script

ncbi-epcr (2.3.12-1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.3.12-2 [hppa, powerpcspe], 2.3.12-1 [avr32, m68k])

Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-rrna-data (6.1.20110713-6)

large rRNA BLAST databases distributed with the NCBI toolkit

ncbi-tools-bin (6.1.20110713-6 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 6.1.20110713-4 [alpha, sh4, sparc64], 6.1.20110713-1 [powerpcspe], 6.1.20100808-2 [hppa], 6.1.20090809-1 [avr32], 6.1.20080302-4 [m68k])

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20110713-6 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 6.1.20110713-4 [alpha, sh4, sparc64], 6.1.20110713-1 [powerpcspe], 6.1.20100808-2 [hppa], 6.1.20090809-1 [avr32], 6.1.20080302-4 [m68k])

NCBI libraries for biology applications (X-based utilities)

nco (4.0.9-1+b2 [hurd-i386, sh4], 4.0.9-1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 4.0.8-1 [sparc64], 4.0.7-1 [hppa], 3.9.0-1 [m68k])

command-line operators to analyze netCDF files

ncoils (2002-3+b1 [hurd-i386], 2002-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2002-2 [hppa, powerpcspe], 2002-1 [avr32])

coiled coil secondary structure prediction

ncview (1.93g-1+b3 [armel, hurd-i386, i386, ia64], 1.93g-1+b2 [alpha, amd64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4, sparc], 1.93g-1+b1 [armhf, hppa, s390x, sparc64])

A X11 visual browser for NetCDF format files

necpp (1.5.0+cvs20101003-2.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.5.0+cvs20101003-2 [hppa, powerpcspe], 1.3.0+cvs20090101-1 [m68k])

NEC2 Evolution Antenna Modelling System

neobio (0.0.20030929-1)

pairwise sequence alignments

netcdf-bin (1:4.1.3-6+b1 [hurd-i386], 1:4.1.3-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1:4.1.1-8 [sparc64], 1:4.1.1-5 [hppa], 1:3.6.2-3.1 [m68k])

Programs for reading and writing NetCDF files

nexus-tools (4.2.1-svn1614-1+b1 [alpha, amd64, armel, armhf, i386, ia64, mipsel, powerpc, s390, sh4, sparc], 4.2.1-svn1614-1 [s390x])

NeXus scientific data file format - applications

njplot (2.4-1+b1 [hurd-i386], 2.4-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.3-3 [hppa, powerpcspe], 2.3-2 [avr32, m68k])

phylogenetic tree drawing program

node-sphericalmercator (1.0.1-2)

Spherical Mercator projection support for NodeJS

node-srs (0.2.12+ds1-1+b1 [amd64, armel, armhf, i386], 0.2.12+ds1-1 [mipsel])

spatial reference library for NodeJS

numdiff (5.6.0-1+b1 [hurd-i386], 5.6.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Compare similar files with numeric fields.

nwchem (6.1-3)

High-performance computational chemistry software

nwchem-data (6.1-3)

High-performance computational chemistry software (data files)

oar-admin (2.5.2-2)

OAR batch scheduler administration tools package

oar-api (2.5.2-2)

transitional dummy package

oar-common (2.5.2-2)

OAR batch scheduler common package

oar-desktop-computing-agent (2.5.2-2)

OAR desktop computing agent

oar-desktop-computing-cgi (2.5.2-2)

OAR desktop computing HTTP proxy CGI

oar-node (2.5.2-2)

OAR batch scheduler node package

oar-restful-api (2.5.2-2)

OAR RESTful API

oar-server (2.5.2-2)

OAR batch scheduler server package

oar-server-mysql (2.5.2-2)

OAR batch scheduler MySQL server backend package

oar-server-pgsql (2.5.2-2)

OAR batch scheduler PostgreSQL server backend package

oar-user (2.5.2-2)

OAR batch scheduler user package

oar-user-mysql (2.5.2-2)

OAR batch scheduler MySQL user backend package

oar-user-pgsql (2.5.2-2)

OAR batch scheduler PostgreSQL user backend package

oar-web-status (2.5.2-2)

OAR batch scheduler visualization tool package

oasis3 (3.3.beta.dfsg.1-8+b2 [hurd-i386], 3.3.beta.dfsg.1-8+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.3.beta.dfsg.1-8 [sparc64], 3.3.beta.dfsg.1-5 [hppa])

Coupler for exchanging fields between components of Earth system models

oasis3-examples (3.3.beta.dfsg.1-8+b2 [hurd-i386], 3.3.beta.dfsg.1-8+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.3.beta.dfsg.1-8 [sparc64], 3.3.beta.dfsg.1-5 [hppa])

Example models for the OASIS climate model coupler

obdgpslogger (0.16-1.1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4, sparc, sparc64], 0.16-1 [powerpcspe])

suite of tools to log OBDII and GPS data

objcryst-fox (1.9.6.0-2+b1 [hurd-i386], 1.9.6.0-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.9.0.2-1 [hppa, powerpcspe], 1.8.0.R1087-1 [m68k])

Free Objects for Xtallography

oce-draw (0.9.1-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x], 0.9.1-1 [sh4, sparc])

OpenCASCADE Community Edition CAE platform shared library

octave-biosig (1.3.0-2 [amd64, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, s390x], 1.3.0-1 [armel, armhf, mips, mipsel], 0.96.3+svn2677-3 [alpha, sh4])

Octave bindings for BioSig library

octave-gdf (0.1.2-2)

IO library for the GDF -- Octave interface

octave-lhapdf (5.8.7-2 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390x], 5.8.7-1 [armel])

Octave Bindings for LHAPDF

octave-psychtoolbox-3 (3.0.9+svn2579.dfsg1-1)

toolbox for vision research -- Octave bindings

odin (1.8.5-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.8.4-1 [armhf, sh4], 1.8.1-3 [sparc64])

develop, simulate and run magnetic resonance sequences

ogdi-bin (3.2.0~beta2-7+b1 [hurd-i386], 3.2.0~beta2-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 3.2.0~beta2-6 [avr32, hppa], 3.2.0~beta2-4 [m68k])

Open Geographic Datastore Interface Library -- utilities

openbabel (2.3.1+dfsg-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sparc], 2.3.1+dfsg-2 [mipsel, sh4, sparc64], 2.2.3-1+b1 [hppa], 2.2.3-1 [powerpcspe], 2.2.1-1 [m68k])

Chemical toolbox utilities (cli)

openbabel-gui (2.3.1+dfsg-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sparc], 2.3.1+dfsg-2 [mipsel, sh4, sparc64])

Chemical toolbox utilities (graphical user interface)

opencascade-draw (6.5.0.dfsg-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 6.3.0.dfsg.1-6 [hppa])

OpenCASCADE CAE platform shared library

opencascade-wok (6.3.0.dfsg.1-6)

OpenCASCADE CAE platform shared library

openjump (1.0-4) [contrib]

Open Java Unified Mapping Platform JUMP

openmeeg-tools (2.0.0.dfsg-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel], 2.0.0.dfsg-2+b1 [mips, powerpc, s390, sparc])

tools for solving EEG and MEG forward and inverse problems

openmx (3.5-1+b1 [hurd-i386], 3.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 3.2.4.dfsg-3 [hppa, m68k])

Package for nano-scale material simulations

openrocket (12.03-1)

Model Rocket Simulator

openturns-examples (1.0-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sh4, sparc], 0.15-3.1 [mipsel], 0.13.2-8+b1 [hurd-i386], 0.13.2-8 [hppa, powerpcspe, sparc64])

examples of OpenTURNS functionalities

openturns-validation (1.0-3)

validation files for OpenTURNS

openturns-wrapper (0.15-3.1 [mipsel], 0.15-2 [armhf], 0.13.2-8+b1 [hurd-i386], 0.13.2-8 [alpha, hppa, powerpcspe, sparc64])

example of a wrapper for OpenTURNS

openuniverse (1.0beta3.1+dfsg-3+b1 [hurd-i386], 1.0beta3.1+dfsg-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0beta3.1+dfsg-1+b100 [powerpcspe], 1.0beta3.1+dfsg-1+b1 [hppa], 1.0beta3.1+dfsg-1 [avr32, m68k])

3D Universe Simulator

openuniverse-common (1.0beta3.1+dfsg-3)

3D Universe Simulator data files

openwalnut-modules (1.2.5-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x], 1.2.5-1 [sh4])

Multi-modal medical and brain data visualization tool.

openwalnut-qt4 (1.2.5-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x], 1.2.5-1 [sh4])

Multi-modal medical and brain data visualization tool.

opj2dat (20080225-2.1+b1 [hurd-i386], 20080225-2.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 20080225-2+b100 [powerpcspe], 20080225-2 [avr32, hppa, m68k])

OriginLab Origin project files to data files converter

optgeo (2.11-3)

simulator for geometrical optics

opticalraytracer (3.2-1)

Virtual lens design workshop

origami (0.7.4-1)

command-line management tool for Folding @ Home clients

ossim-core (1.7.21-4 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.7.21-3 [sparc64], 1.7.21-1+b1 [hppa])

The OSSIM core utilities

otf-trace (1.10.2+dfsg-2)

Open Trace Format support library - development files

ovito (0.9.5-2 [armel, i386, ia64, kfreebsd-i386, powerpc, s390, s390x, sh4, sparc], 0.9.5-1 [alpha, amd64, armhf, mips], 0.9.2-1.2 [hurd-i386, kfreebsd-amd64, mipsel, sparc64], 0.9.2-1 [hppa, powerpcspe])

visualization and analysis tool for atomistic simulation data

paje.app (1.98-1+b1 [hurd-i386], 1.98-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.97+cvs20080110-2+b3 [hppa], 1.97+cvs20080110-2+b1 [m68k], 1.97+cvs20080110-2 [powerpcspe])

generic visualization tool (Gantt chart and more)

paml (4.5-1) [non-free]

Phylogenetic Analysis by Maximum Likelihood (PAML)

paraview (3.14.1-4 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 3.14.1-1 [hurd-i386, sh4], 3.14.0-1 [alpha], 3.8.1-3 [powerpcspe, sparc64])

Parallel Visualization Application

paw (1:2.14.04.dfsg.2-8 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, s390, sh4, sparc], 1:2.14.04.dfsg.2-7 [powerpcspe], 1:2.14.04.dfsg.2-1 [m68k])

Physics Analysis Workstation - a graphical analysis program

paw++ (1:2.14.04.dfsg.2-8 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, s390, sh4, sparc], 1:2.14.04.dfsg.2-7 [powerpcspe], 1:2.14.04.dfsg.2-1 [m68k])

Physics Analysis Workstation (Lesstif-enhanced version)

paw-common (1:2.14.04.dfsg.2-8)

Physics Analysis Workstation (common files)

paw-demos (1:2.14.04.dfsg.2-8)

Physics Analysis Workstation examples and tests

pdb2pqr (1.7-2+b2 [sh4], 1.7-2+b1 [amd64, armel, i386, ia64, powerpc, s390, sparc], 1.7-2 [s390x, sparc64], 1.7-1 [powerpcspe])

Preparation of protein structures for electrostatics calculations

pegasus-wms (4.0.1+dfsg-4 [amd64, armel, i386, ia64, mips, s390, s390x], 4.0.1+dfsg-3 [armhf, powerpc])

Scientific workflow management system for Condor

perlprimer (1.1.21-1)

Graphical design of primers for PCR

phy-spread (1.0.3-1) [non-free]

analyze and visualize phylogeographic reconstructions

phylip (1:3.69-1+b1 [hurd-i386], 1:3.69-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc]) [non-free]

package of programs for inferring phylogenies

phyml (2:20110919-1+b1 [hurd-i386], 2:20110919-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2:20110526-1 [powerpcspe], 2:20100720-1 [hppa], 1:200900706-2 [avr32, m68k])

Phylogenetic estimation using Maximum Likelihood

picard-tools (1.46-1)

Command line tools to manipulate SAM and BAM files

picosat (936-4+b1 [hurd-i386], 936-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 936-3 [powerpcspe], 936-2 [hppa], 913-4 [avr32], 846-1 [m68k])

SAT solver with proof and core support

planets (0.1.13-13)

Gravitation simulation of planetary bodies

plastimatch (1.5.10+dfsg0-1)

medical image reconstruction and registration

plink (1.07-3+b1 [hurd-i386], 1.07-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.07-1+b100 [powerpcspe], 1.07-1 [avr32, hppa], 1.06-4 [m68k])

whole-genome association analysis toolset

poa (2.0+20060928-3+b1 [hurd-i386], 2.0+20060928-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.0+20060928-2+b100 [powerpcspe], 2.0+20060928-2 [avr32, hppa, m68k])

Partial Order Alignment for multiple sequence alignment

populations (1.2.33+svn0120106-2.1+b1 [hurd-i386], 1.2.33+svn0120106-2.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.33+svn0120106-2 [sparc64], 1.2.33-1 [powerpcspe])

population genetic software

pp-popularity-contest (1.0.5-1+b1 [hurd-i386], 1.0.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

PredictProtein popularity contest

praat (5.3.16-1 [amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 5.3.15-1 [alpha], 5.3.2-1 [sparc64], 5.2.17-1 [hppa, powerpcspe], 5.1.25-1 [avr32], 5.1.7-1 [m68k])

program for speech analysis and synthesis

primer3 (2.3.2-1+b1 [hurd-i386], 2.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.2.3-1 [hppa, mips], 1.1.4-1+b100 [powerpcspe], 1.1.4-1 [avr32, m68k])

Tool to design flanking oligo nucleotides for DNA amplification

probalign (1.4-2+b1 [hurd-i386], 1.4-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

multiple sequence alignment using partition function posterior probabilities

probcons (1.12-9+b1 [hurd-i386], 1.12-9 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.12-8 [powerpcspe], 1.12-7 [hppa], 1.12-4 [avr32, m68k])

PROBabilistic CONSistency-based multiple sequence alignment

probcons-extra (1.12-9+b1 [hurd-i386], 1.12-9 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.12-8 [powerpcspe], 1.12-7 [hppa], 1.12-4 [avr32, m68k])

Extra programs from the probcons package

proda (1.0-8+b1 [hurd-i386], 1.0-8 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0-7+b100 [powerpcspe], 1.0-7 [avr32, hppa, m68k])

multiple alignment of protein sequences

profnet-bval (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profbval

profnet-chop (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profchop

profnet-con (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profcon

profnet-isis (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profisis

profnet-md (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for metadisorder

profnet-norsnet (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for norsnet

profnet-prof (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profacc

profnet-snapfun (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for snapfun

profphd (1.0.38-1)

secondary structure and solvent accessibility predictor

profphd-net (1.0.21-1+b1 [hurd-i386], 1.0.21-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.0.20-1 [powerpcspe])

neural network architecture for profphd

profphd-utils (1.0.9-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.0.8-1 [alpha, sparc64])

profphd helper utilities convert_seq and filter_hssp

proftmb (1.1.10-1+b1 [hurd-i386], 1.1.10-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

per-residue prediction of bacterial transmembrane beta barrels

proj (4.7.0-1)

Cartographic projection filter and library (transitional package)

proj-bin (4.7.0-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 4.7.0-1+b100 [powerpcspe], 4.7.0-1 [avr32, hppa, sparc64], 4.6.1-5 [m68k])

Cartographic projection library (tools)

propka (1.7-2+b2 [sh4], 1.7-2+b1 [amd64, armel, i386, ia64, powerpc, s390, sparc], 1.7-2 [s390x, sparc64], 1.7-1 [powerpcspe])

Modify the protonation state of protein structures

psi3 (3.4.0-3+b1 [hurd-i386], 3.4.0-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.4.0-2 [hppa, powerpcspe, sparc64], 3.4.0-1 [m68k])

Quantum Chemical Program Suite

psychopy (1.73.05.dfsg-1)

environment for creating psychology stimuli in Python

psychtoolbox-3-common (3.0.9+svn2579.dfsg1-1)

toolbox for vision research -- arch/interpreter independent part

psychtoolbox-3-lib (3.0.9+svn2579.dfsg1-1)

toolbox for vision research -- arch-specific parts

pyfai (0.3.5-1+b1 [hurd-i386], 0.3.5-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

python library for Fast Azimuthal Integration

pyformex (0.8.6-4)

program to create 3D geometry from Python scripts.

pyformex-lib (0.8.6-4+b1 [hurd-i386], 0.8.6-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

program to create 3D geometry from Python scripts.

pymca (4.5.0-4+b1 [hurd-i386], 4.5.0-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.4.1p1-1 [hppa, powerpcspe])

Python applications and toolkit for X-ray fluorescence analysis

pymca-data (4.5.0-4)

Architecture independent data files for PyMca

pymol (1.5.0.1-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.4.1-3 [sparc64], 1.4.1-1 [powerpcspe], 1.2r2-1.1+b1 [hppa], 1.1~beta3-2 [m68k])

Molecular Graphics System

pythia8-data (8.1.65-1)

PYTHIA8 data files

qfits-tools (6.2.0-5+b1 [hurd-i386], 6.2.0-5 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.2.0-4 [powerpcspe], 6.2.0-3 [hppa], 6.2.0-2 [avr32], 6.2.0-1 [m68k])

FITS manipulation tools

qgis (1.7.4+1.7.5~20120320-1.1 [alpha, amd64, i386, ia64, kfreebsd-amd64, mips, mipsel, s390], 1.4.0+12730-6 [hppa])

Geographic Information System (GIS)

qgis-api-doc (1.7.4+1.7.5~20120320-1.1)

Quantum GIS API documentation

qgis-common (1.7.4+1.7.5~20120320-1.1)

Quantum GIS - architecture-independent data

qgis-mapserver (1.7.4+1.7.5~20120320-1.1)

Quantum GIS mapserver

qgis-plugin-grass (1.7.4+1.7.5~20120320-1.1 [alpha, amd64, i386, ia64, kfreebsd-amd64, mips, mipsel, s390], 1.4.0+12730-6 [hppa])

GRASS plugin for Quantum GIS

qgis-plugin-grass-common (1.7.4+1.7.5~20120320-1.1)

GRASS plugin for Quantum GIS - architecture-independent data

qgis-providers (1.7.4+1.7.5~20120320-1.1)

collection of data providers to Quantum GIS

qgis-providers-common (1.7.4+1.7.5~20120320-1.1)

collection of data providers to Quantum GIS - architecture-independent files

qgis-sqlanywhere1.7.5 (1.7.4+1.7.5~20120320-1.1)

Quantum GIS sql anywhere plugin and provider

qiime (1.5.0-1)

Quantitative Insights Into Microbial Ecology

qmc (0.94-3+b100 [powerpcspe], 0.94-3+b2 [hurd-i386], 0.94-3+b1 [alpha, hppa, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc], 0.94-3 [amd64, armel, armhf, avr32, kfreebsd-amd64, kfreebsd-i386, s390x, sh4, sparc64])

Quine McClusky Simplification Tool

qsearch-tools (1.0.8-3 [avr32], 1.0.8-1 [m68k]) [debports]

qsearch machine-learning command-line utilities

qtdmm (0.8.13-3 [alpha, armhf, avr32, hppa], 0.8.12-2.1 [m68k])

GUI for digital multimeter

qthid-fcd-controller (3.1-6)

Funcube Dongle controller

quantum-espresso (5.0-1 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, s390x], 4.3.2-2 [alpha, ia64, mipsel, sparc], 4.3.2-1 [armel, armhf])

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

quantum-espresso-data (5.0-1)

Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)

qutemol (0.4.1~cvs20081111-2+b3 [hurd-i386], 0.4.1~cvs20081111-2+b2 [amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, s390x, sh4, sparc], 0.4.1~cvs20081111-2+b1 [alpha, mipsel])

interactive visualization of macromolecules

raccoon (1.0-1) [contrib]

preparation of in silico drug screening projects

rasmol (2.7.5.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.7.5-3 [powerpcspe, sparc64], 2.7.5-2 [hppa], 2.7.5-1 [avr32], 2.7.4.2-5 [m68k])

Visualize biological macromolecules

raster3d (3.0-2-4+b1 [hurd-i386], 3.0-2-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.0-2-2 [powerpcspe])

tools for generating images of proteins or other molecules

raxml (7.2.8-2)

Randomized Axelerated Maximum Likelihood of phylogenetic trees

rdkit-data (201203-1)

Collection of cheminformatics and machine-learning software (data files)

readseq (1-9+b1 [hurd-i386], 1-9 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1-8+b100 [powerpcspe], 1-8 [avr32, hppa], 1-7 [m68k])

Conversion between sequence formats

reprof (1.0.1-1)

protein secondary structure and accessibility predictor

rnahybrid (2.1.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.1-2+b100 [powerpcspe], 2.1-2 [avr32, hppa, m68k])

Fast and effective prediction of microRNA/target duplexes

robot-player (3.0.2+dfsg-4+b1 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sparc], 3.0.2+dfsg-4 [sh4], 3.0.2+dfsg-2.1 [powerpcspe], 3.0.1+dfsg-1.1 [hppa], 2.0.4-3 [m68k])

Networked server for robots and sensors

robot-player-dev (3.0.2+dfsg-4)

Networked server for robots and sensors - development package

saga (2.0.8+dfsg-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 2.0.8+dfsg-1 [sparc64], 2.0.7+dfsg-2 [sh4], 2.0.4+dfsg-2+b1 [hppa])

System for Automated Geoscientific Analyses

saint (2.3.3-1)

Significance Analysis of INTeractome

salome (5.1.3-10 [hppa], 5.1.3-9 [alpha])

Numerical simulation pre- and post-processor

salome-common (5.1.3-10)

Numerical simulation pre- and post-processor

samtools (0.1.18-1+b1 [hurd-i386], 0.1.18-1 [alpha, amd64, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, sh4], 0.1.14-1 [hppa], 0.1.7a~dfsg-1 [avr32])

processing sequence alignments in SAM and BAM formats

saods9 (6.2+dfsg-1 [amd64, i386, ia64, mips, powerpc, s390, s390x], 4.0b7-2 [alpha, hppa, m68k])

Image display tool for astronomy

saods9-blt (6.2+dfsg-1)

BLT subpackage for saods9

saods9-data (6.2+dfsg-1)

Image display tool for astronomy (shared data)

sat4j (2.3.1-1)

Efficient library of SAT solvers in Java

savi (1.4.5-4+b1 [hurd-i386], 1.4.5-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.4.5-3 [powerpcspe])

satellite constellation visualisation

sbmltoolbox (4.1.0-1)

libsbml toolbox for octave and matlab

science-astronomy (0.16)

Debian Science Astronomy packages

science-astronomy-dev (0.16)

Debian Science Astronomy-dev packages

science-bci (0.16)

Debian Science packages for the design and use of

science-biology (0.16)

Debian Science Biology packages

science-chemistry (0.16)

Debian Science Chemistry packages

science-config (0.16)

Debian Science Project config package

science-dataacquisition (0.16)

Debian Science data acquisition packages

science-dataacquisition-dev (0.16)

Debian Science data acquisition development packages

science-distributedcomputing (0.16)

Debian Science Distributed Computing packages

science-electronics (0.16)

Debian Science Electronics packages

science-electrophysiology (0.16)

Debian Science packages for Electrophysiology

science-engineering (0.16)

Debian Science Engineering packages

science-engineering-dev (0.16)

Debian Science Engineering-dev packages

science-geography (0.16)

Debian Science Geography packages

science-highenergy-physics (0.16)

Debian Science High Energy Physics packages

science-imageanalysis (0.16)

Debian Science image analysis packages

science-linguistics (0.16)

Debian Science Linguistics packages

science-machine-learning (0.16)

Debian Science Machine Learning packages

science-mathematics (0.16)

Debian Science Mathematics packages

science-mathematics-dev (0.16)

Debian Science Mathematics-dev packages

science-meteorology (0.16)

Debian Science Meteorology packages

science-meteorology-dev (0.16)

Debian Science Meteorology-dev packages

science-nanoscale-physics (0.16)

Debian Science Nanoscale Physics packages

science-nanoscale-physics-dev (0.16)

Debian Science Nanoscale Physics development packages

science-neuroscience-cognitive (0.16)

Debian Science packages for Cognitive Neuroscience

science-neuroscience-modeling (0.16)

Debian Science packages for modeling of neural systems

science-numericalcomputation (0.16)

Debian Science Numerical Computation packages

science-physics (0.16)

Debian Science Physics packages

science-psychophysics (0.16)

Debian Science packages for Psychophysics

science-robotics (0.16)

Debian Robotics packages

science-statistics (0.16)

Debian Science Statistics packages

science-tasks (0.16)

Debian Science tasks for tasksel

science-typesetting (0.16)

Debian Science typesetting packages

science-viewing (0.16)

Debian Science data visualisation packages

seaview (1:4.3.3-3) [non-free]

Multiplatform interface for sequence alignment and phylogeny

seesat5 (0.90.10-1.1+b100 [powerpcspe], 0.90.10-1.1+b1 [hurd-i386], 0.90.10-1.1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

a satellite location program

seq-gen (1.3.3-1) [non-free]

simulate the evolution of nucleotide or amino acid sequences

seqan-apps (1.3.1-1 [alpha, amd64, armhf, i386, ia64, mips, mipsel, powerpc, s390, sh4], 1.2-1+b100 [powerpcspe], 1.2-1+b1 [hurd-i386], 1.2-1 [avr32, hppa, sparc64])

C++ library for the analysis of biological sequences

sextractor (2.8.6-1+b1 [hurd-i386], 2.8.6-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, s390x, sparc], 2.4.4-1+b100 [powerpcspe], 2.4.4-1 [armhf, avr32, hppa, m68k, sh4, sparc64])

Source extractor for astronomical images

shelxle (1.0.557-1)

graphical user interface for SHELXL

shogun-cmdline (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-cmdline-static (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-csharp-modular (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-elwms (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-elwms-static (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-java-modular (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-lua-modular (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-octave (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-octave-modular (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-python (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-python-modular (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc], 0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-python-static (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-r (0.10.0-2.1+b1 [sh4], 0.10.0-2.1 [alpha, armhf, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 0.10.0-2 [hppa, powerpcspe])

Large Scale Machine Learning Toolbox

shogun-r-static (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

shogun-ruby-modular (1.1.0-4 [amd64, armel, i386, s390x, sparc], 1.1.0-1 [powerpc])

Large Scale Machine Learning Toolbox

sibsim4 (0.20-1+b100 [powerpcspe], 0.20-1+b1 [hurd-i386], 0.20-1 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.17-1 [m68k])

align expressed RNA sequences on a DNA template

sift (4.0.3b-3) [non-free]

predicts if a substitution in a protein has a phenotypic effect

sigma-align (1.1.3-3+b1 [hurd-i386], 1.1.3-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.1.3-1+b100 [powerpcspe], 1.1.3-1 [avr32, hppa, m68k])

Simple greedy multiple alignment of non-coding DNA sequences

sigviewer (0.5.1+svn556-1+b2 [hurd-i386], 0.5.1+svn556-1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x], 0.5.1+svn556-1 [sh4])

GUI viewer for biosignals such as EEG, EMG, and ECG

sim4 (0.0.20030921-3+b100 [powerpcspe], 0.0.20030921-3+b1 [hurd-i386], 0.0.20030921-3 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

tool for aligning cDNA and genomic DNA

simgrid (3.7-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.6.2-1 [sparc64], 3.6.1-3 [powerpcspe])

Toolkit for scalable simulation of distributed applications

sixpack (1:0.68-1) [contrib]

full-featured package for XAS analysis

slang-xfig (0.2.0~.35-1.1+b1 [hurd-i386], 0.2.0~.35-1.1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2.0~.35-1+b100 [powerpcspe], 0.2.0~.35-1 [avr32, hppa], 0.2.0~.33-1 [m68k])

produce plots and drawings through Xfig's fig2dev in S-Lang

spass (3.7-3+b1 [hurd-i386], 3.7-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 3.7-2 [hppa], 2.1-4 [avr32, m68k])

An automated theorem prover for first-order logic with equality

spatialite-bin (3.0.0-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, s390x, sh4, sparc], 3.0.0~beta20110817-3 [powerpc], 2.4.0~rc2-5+b1 [hppa, powerpcspe], 2.4.0~rc2-5 [avr32])

Geospatial extension for SQLite - tools

spd (1.3.0-1+b1 [hurd-i386], 1.3.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Synchrotron image corrections and azimuthal integration

squizz (0.99a-2+b1 [hurd-i386], 0.99a-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.99a-1 [powerpcspe])

Converter for genetic sequences and alignments

sra-toolkit (2.1.7a-1)

utilities for the NCBI Sequence Read Archive

sra-toolkit-libs-dev (2.1.7a-1)

Development files for the NCBI SRA Toolkit's libraries

sra-toolkit-libs0 (2.1.7a-1)

Libraries for the SRA Toolkit

ssake (3.8-2)

genomics application for assembling millions of very short DNA sequences

ssake-examples (3.8-2)

example data for SSAKE, a genomic assembler of short reads

ssystem (1.6-18) [debports]

3D solar system simulator

staden-io-lib-utils (1.12.4-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.12.2-1 [avr32], 1.12.1-1 [m68k])

programs for maniuplating DNA sequencing files

stage (2.0.3-2) [debports]

Robot simulation for Player

stardata-common (0.7+b100 [powerpcspe], 0.7+b1 [hurd-i386], 0.7 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.6 [m68k])

Common framework to manage astronomy packages

starplot (0.95.5-4+b100 [powerpcspe], 0.95.5-4+b2 [hurd-i386], 0.95.5-4 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.95.5-3 [m68k])

3-dimensional perspective star map viewer

starpu-contrib-examples (1.0.1-2 [amd64], 1.0.0-1 [i386]) [contrib]

Task scheduler for heterogeneous multicore machines - exs

starpu-examples (1.0.1-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.9.1-3 [powerpcspe])

Task scheduler for heterogeneous multicore machines - exs

starpu-examples

virtual package provided by starpu-contrib-examples

stellarium (0.11.2-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.11.0-1 [powerpcspe, sparc64], 0.10.5-1 [hppa], 0.10.2-1 [m68k])

real-time photo-realistic sky generator

stellarium-data (0.11.2-1)

Stellarium data files

step (4:4.7.4-2+b1 [hurd-i386], 4:4.7.4-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 4:4.4.5-2 [hppa])

interactive physical simulator for KDE

stimfit (0.10.18-1.1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 0.10.18-1.1 [sh4, sparc64])

A program for viewing and analyzing electrophysiological data

sumo (0.15.0~dfsg-2)

Simulation of Urban MObility (SUMO)

survex (1.2.6-4 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.2-1 [sparc64], 1.1.16-1 [powerpcspe], 1.1.14-1 [hppa], 1.0.39.1-4 [avr32], 1.0.39.1-2.1 [m68k])

cave surveying and mapping software

survex-aven (1.2.6-4 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.2-1 [sparc64], 1.1.16-1 [powerpcspe], 1.1.14-1 [hppa], 1.0.39.1-4 [avr32], 1.0.39.1-2.1 [m68k])

sophisticated cave survey viewer for Survex

survex-svxedit (1.2.6-4)

survey data editor for Survex

swe-basic-data (1.77.00.0005-2)

basic data files for the libswe package

swe-standard-data (00004-1)

standard data for the Swiss Ephemeris

syrthes (3.4.3-dfsg1-6+b1 [hurd-i386], 3.4.3-dfsg1-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.4.3-dfsg1-3 [hppa], 3.4.2-dfsg1-3+b100 [powerpcspe], 3.4.2-dfsg1-3 [avr32, sparc64])

Transient thermal simulations in complex solid geometries

t-coffee (9.02.r1228-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 8.99-1 [powerpcspe], 8.84-1 [hppa], 8.47-1 [avr32], 5.72-1 [m68k])

Multiple Sequence Alignment

t-coffee-examples (9.02.r1228-2)

annotated examples for the use of T-Coffee

tabix (0.2.5-3 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.2.5-1 [powerpcspe], 0.2.3-1 [hppa])

generic indexer for TAB-delimited genome position files

tcd-utils (20061127-2+b100 [powerpcspe], 20061127-2+b1 [hurd-i386], 20061127-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

convert Tide Constituent Database (TCD) files

terraintool (1.12a-1)

Generates survex format terrain models from SRTM and ASTER data

tessa (0.3.1-6+b1 [hurd-i386], 0.3.1-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.3.1-4+b4 [hppa], 0.3.1-4+b1 [m68k], 0.3.1-4 [powerpcspe])

simulation of 3D optical systems with the FDTD method

tessa-mpi (0.3.1-6+b1 [hurd-i386], 0.3.1-6 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.3.1-4+b4 [hppa], 0.3.1-4+b1 [m68k], 0.3.1-4 [powerpcspe])

simulation of 3D optical systems using FDTD on MPI clusters

therion (5.3.9-2 [amd64], 5.3.9-1+b1 [alpha, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4, sparc], 5.3.9-1 [s390x], 5.3.8-2 [sparc64], 5.3.3-1.1 [hppa], 0.5.1+nmu1 [m68k])

Cave surveying - 2D and 3D drawing software

therion-viewer (5.3.9-2 [amd64], 5.3.9-1+b1 [alpha, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4, sparc], 5.3.9-1 [s390x], 5.3.8-2 [sparc64], 5.3.3-1.1 [hppa], 0.5.1+nmu1 [m68k])

Cave surveying - 3D viewer for therion models

theseus (1.6.2-1+b1 [hurd-i386], 1.6.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.6.1-1 [hppa, powerpcspe], 1.4.3-2 [avr32], 1.3.9-1 [m68k])

superimpose macromolecules using maximum likelihood

tigr-glimmer (3.02-2+b100 [powerpcspe], 3.02-2+b2 [hurd-i386], 3.02-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.02-1 [m68k])

Gene detection in archea and bacteria

timbl (6.4.2-1+b1 [hurd-i386], 6.4.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.4.0-1 [hppa, powerpcspe])

Tilburg Memory Based Learner

timblserver (1.4-2+b1 [hurd-i386], 1.4-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2-4 [powerpcspe])

Server extensions for Timbl

tm-align (20120124-1+b1 [hurd-i386], 20120124-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 20110130-2 [powerpcspe])

structual alignment of proteins

tophat (2.0.0-2 [alpha, amd64, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sh4], 2.0.0-1 [hurd-i386])

fast splice junction mapper for RNA-Seq reads

transcalc (0.14-5+b100 [powerpcspe], 0.14-5+b1 [hurd-i386], 0.14-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.14-4 [avr32, m68k])

microwave and RF transmission line calculator

transtermhp (2.09-1+b1 [hurd-i386], 2.09-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.07-1 [powerpcspe])

find rho-independent transcription terminators in bacterial genomes

tree-ppuzzle (5.2-7+b1 [hurd-i386], 5.2-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc, sparc64], 5.2-6 [powerpcspe], 5.2-5 [avr32, hppa, m68k, sh4])

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.2-7+b1 [hurd-i386], 5.2-7 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc, sparc64], 5.2-6 [powerpcspe], 5.2-5 [avr32, hppa, m68k, sh4])

Reconstruction of phylogenetic trees by maximum likelihood

treeviewx (0.5.1+20100823-1+b1 [hurd-i386], 0.5.1+20100823-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.5.1-7 [hppa, powerpcspe], 0.5.1-5 [m68k])

Displays and prints phylogenetic trees

triangle-bin (1.6-2) [non-free]

High-quality 2-D mesh generator binary programs

tunnelx (20110801-2.1)

Cave Survey drawing software

twms (0.03e-2)

tiny web map service

ucto (0.5.2-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 0.5.0-1 [alpha], 0.4.3-1+b1 [sparc64], 0.4.3-1 [hppa, powerpcspe])

Unicode Tokenizer

udav (0.7.1.2-3+b1 [hurd-i386], 0.7.1.2-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.7.1.2-2 [powerpcspe], 0.6.3-2 [hppa])

application for data visualization based on MathGL

uhd-host (3.4.2-1 [amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 3.3.2-3 [alpha])

universal hardware driver for Ettus Research products

units-filter (3.5-2+b1 [hurd-i386], 3.5-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.5-1 [powerpcspe], 3.2-1 [hppa], 3.0-1 [avr32], 2.9-8 [m68k])

Parser for expressions concerning physical values

urg-utils (0.8.12-4 [alpha, amd64, armel, armhf, i386, ia64, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.8.12-1 [powerpcspe], 0.8.11-1 [avr32, hppa])

utilities for Hokuyo URG/UTM laser range scanners

v-sim (3.6.0-2+b3 [armel, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390], 3.6.0-2+b2 [amd64, hurd-i386, i386, mips, mipsel, sparc], 3.6.0-2+b1 [alpha, armhf, sh4], 3.6.0-2 [s390x], 3.5.2-1 [hppa, sparc64], 3.4.3-1 [m68k])

Visualize atomic structures

v-sim-common (3.6.0-2)

Visualize atomic structures (support files)

v-sim-plugins (3.6.0-2+b3 [armel, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390], 3.6.0-2+b2 [amd64, hurd-i386, i386, mips, mipsel, sparc], 3.6.0-2+b1 [alpha, armhf, sh4], 3.6.0-2 [s390x], 3.5.2-1 [hppa, sparc64], 3.4.3-1 [m68k])

Plugins for V_Sim (a 3D visualization package)

vcftools (0.1.9-1 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.1.6-1 [powerpcspe])

designed for working with VCF files

velvet (1.2.03~nozlibcopy-1+b1 [hurd-i386], 1.2.03~nozlibcopy-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.1.02~nozlibcopy-1 [powerpcspe], 1.0.18~nozlibcopy-1 [hppa], 0.7.61~nozlibcopy-1 [avr32], 0.7.48-1 [m68k])

Nucleic acid sequence assembler for very short reads

velvet-example (1.2.03~nozlibcopy-1)

Example data for the Velvet sequence assembler

veusz (1.15-1)

2D scientific plotting application with graphical interface

veusz-helpers (1.15-1+b1 [amd64], 1.15-1 [alpha, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Architecture-specific helper module for Veusz

via-bin (2.0.4-2+b1 [hurd-i386], 2.0.4-2 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc], 1.6.0-3 [armhf, hppa, powerpcspe, sh4, sparc64])

tools for volumetric image analysis

viewmol (2.4.1-18 [amd64, armel, hurd-i386, i386, ia64, mips, mipsel, powerpc, s390, s390x, sparc], 2.4.1-17+b3 [armhf], 2.4.1-17+b2 [alpha], 2.4.1-17+b1 [sh4, sparc64], 2.4.1-17 [hppa, powerpcspe], 2.4.1-15 [avr32, m68k])

A graphical front end for computational chemistry programs.

vistrails (2.0.alpha~1-3 [all], 2.0.alpha~1-2 [alpha, armhf, sh4, sparc64])

Science visualisation workflow toolkit

vmtk (0.9.0-7) [non-free]

the Vascular Modeling Toolkit

volview (3.4-3)

Advanced volume visualization tool

vowpal-wabbit (5.1+83-gffab10a-2+b1 [hurd-i386], 5.1+83-gffab10a-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.1+83-gffab10a-1 [powerpcspe], 4.1+20100420-1 [hppa])

fast and scalable online machine learning algorithm

voxbo (1.8.5~svn1246-1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.8.5~svn1246-1 [hppa, powerpcspe, sparc64])

processing, statistical analysis, and display of brain imaging data

wcslib-tools (4.13.4-1+b1 [hurd-i386], 4.13.4-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

Command line tools utilizing wcslib

wcstools (3.8.4-2+b1 [hurd-i386], 3.8.4-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Handle the WCS of a FITS image

weka (3.6.6-1)

Machine learning algorithms for data mining tasks

wise (2.4.1-10+b1 [hurd-i386], 2.4.1-10 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 2.4.1-8+b100 [powerpcspe], 2.4.1-8 [avr32, hppa], 2.4.1-6 [m68k])

comparison of biopolymers, commonly DNA and protein sequences

worldwind (0.5.0-8) [non-free]

3D Virtual Globe

xbs (0-8+b100 [powerpcspe], 0-8+b1 [hurd-i386], 0-8 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0-7.3 [m68k])

3-d models and movies of molecules

xcrysden (1.5.52-1+b1 [hurd-i386], 1.5.52-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Crystalline and Molecular Structure Visualizer

xcrysden-data (1.5.52-1)

Crystalline and Molecular Structure Visualizer (Data Files)

xdrawchem (2.0-2 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.0-1 [powerpcspe, sparc64], 1.9.9-5 [hppa], 1.9.9-4+b2 [m68k])

Chemical structures and reactions editor

xflr5 (6.06-1+b1 [hurd-i386], 6.06-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.05-1 [powerpcspe])

analysis tool for airfoils

xfoil (6.97.dfsg-3+b100 [powerpcspe], 6.97.dfsg-3+b1 [hurd-i386], 6.97.dfsg-3 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64])

program for the design and analysis of subsonic airfoils

xmakemol (5.16-5+b1 [hurd-i386, powerpcspe], 5.16-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.16-4 [avr32], 5.16-1 [m68k])

A program for visualizing atomic and molecular systems

xmakemol-gl (5.16-5+b1 [hurd-i386, powerpcspe], 5.16-5 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 5.16-4 [avr32], 5.16-1 [m68k])

A program for visualizing atomic and molecular systems (OpenGL)

xmds (1.6.6-7 [alpha, amd64, armel, armhf, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.6.6-4 [hppa, powerpcspe], 1.6.6-2 [m68k])

eXtensible Multi-Dimensional Simulator

xorsa (0.7.0-13) [debports]

tool for Celestial Mechanics investigations

xpa-tools (2.1.13-1+b1 [hurd-i386], 2.1.13-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

Tools for seamless communication between Unix programs

xplot (1.19-9+b100 [powerpcspe], 1.19-9+b1 [alpha, hurd-i386, powerpc, s390], 1.19-9 [amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390x, sh4, sparc, sparc64], 1.19-7.2 [m68k])

simple on-screen x-y column data plotter

xplot-xplot.org (0.90.7.1-2+b100 [powerpcspe], 0.90.7.1-2+b1 [hurd-i386], 0.90.7.1-2 [alpha, amd64, armel, armhf, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 0.90.7.1-1 [m68k])

fast tool to graph and visualize lots of data

xppaut (6.11b+1.dfsg-1+b1 [hurd-i386], 6.11b+1.dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 5.98-1 [avr32, m68k])

Phase Plane Plus Auto: Solves many kinds of equations

xtide (2.11-1+b1 [hurd-i386], 2.11-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 2.10-2 [avr32], 2.9.5-3 [m68k])

provides tide and current predictions

xtide-coastline (20020202-1)

coastline data for xtide

xtide-data (20100529-1)

Harmonics data for xtide

xtide-data-nonfree (20100529-1) [non-free]

Harmonics data for xtide (Canada, Netherlands, Germany and UK)

xyscan (3.31-3+b1 [hurd-i386], 3.31-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

data thief for scientists

yade (0.80.1-1 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390x], 0.80.0-3 [sparc], 0.70.0-4 [armel], 0.60.2-2 [all])

Platform for discrete element modeling

yale (5.0.95-2) [non-free]

stellar data set from the Yale Bright Star Catalog

ygraph (0.16~cvs20090218-1.1+b2 [hurd-i386], 0.16~cvs20090218-1.1+b1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc, sparc64], 0.16~cvs20090218-1.1 [sh4], 0.16~cvs20090218-1+b100 [powerpcspe], 0.16~cvs20090218-1 [avr32, hppa, m68k])

plot and animate data sets

yorick (2.2.02+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.2.01+dfsg-2 [hurd-i386, sparc64], 2.1.06+dfsg-2+b1 [powerpcspe], 2.1.06+dfsg-2 [hppa], 2.1.05+dfsg-6 [m68k])

interpreted language and scientific graphics

yorick-av (0.0.1-1+b1 [amd64], 0.0.1-1 [alpha, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sh4])

write movies from Yorick in various formats

yorick-cubeview (1.6-1)

3D FITS data viewer specialized in spectro-imaging

yorick-curses (0.1-4+b1 [hurd-i386], 0.1-4 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.1-3 [m68k])

interface to the (n)curses library for the Yorick language

yorick-data (2.2.02+dfsg-1)

interpreted library for the Yorick language

yorick-dev (2.2.02+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.2.01+dfsg-2 [hurd-i386, sparc64], 2.1.06+dfsg-2+b1 [powerpcspe], 2.1.06+dfsg-2 [hppa], 2.1.05+dfsg-6 [m68k])

development files for the Yorick interpreted language

yorick-gl (1.1+cvs20070922+dfsg-4+b1 [hurd-i386], 1.1+cvs20070922+dfsg-4 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.1+cvs20070922+dfsg-3 [hppa, powerpcspe], 1.1+cvs20070922+dfsg-2 [m68k])

OpenGL 3D graphics support for the Yorick language

yorick-hdf5 (0.8.0-2+b1 [hurd-i386, sh4], 0.8.0-2 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sparc, sparc64], 0.8.0-1+b1 [hppa], 0.8.0-1 [powerpcspe], 0.6.1-2 [m68k])

Hierarchical Data Format 5 interface for the Yorick language

yorick-imutil (0.5.7-1+b1 [hurd-i386], 0.5.7-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.5.5-1 [hppa], 0.5.3-1 [m68k])

fast image manipulation routines for the Yorick language

yorick-mira (0.9.10-3)

optical interferometry image reconstruction within Yorick

yorick-ml4 (0.6.0-1+b1 [hurd-i386], 0.6.0-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64], 0.5.1-3 [m68k])

Matlab file format support for the Yorick language

yorick-mpeg (0.1-1+b1 [hurd-i386], 0.1-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc])

MPEG output support for the Yorick language

yorick-mpy-common (2.2.02+dfsg-1)

Message Passing Yorick (common files)

yorick-mpy-mpich2 (2.2.02+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 2.2.01+dfsg-2 [hurd-i386, sparc64], 2.1.06+dfsg-2+b1 [powerpcspe], 2.1.06+dfsg-2 [hppa])

Message Passing Yorick (MPICH2 build)

yorick-mpy-openmpi (2.2.02+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 2.2.01+dfsg-2 [hurd-i386, sparc64])

Message Passing Yorick (OpenMPI build)

yorick-optimpack (1.3.1+dfsg1-1+b1 [hurd-i386], 1.3.1+dfsg1-1 [alpha, amd64, armel, armhf, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390, s390x, sh4, sparc, sparc64])

optimization of large scale problems for the Yorick language

yorick-soy (1.4.0-1+b1 [hurd-i386], 1.4.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc], 1.2.01-3 [sparc64], 1.2.01-2 [hppa, m68k, powerpcspe])

sparse matrix operations for the Yorick language

yorick-spydr (0.8.2-1)

FITS image display and simple analysis

yorick-yao (4.9.0-1+b1 [hurd-i386], 4.9.0-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 4.5.1-1 [hppa, powerpcspe], 4.2.6-1 [m68k])

Yorick-based adaptive optics system simulator

yorick-yeti (6.3.2-1+b1 [hurd-i386], 6.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.3.1-1 [hppa, powerpcspe], 6.2.2-2 [m68k])

utility plugin for the Yorick language

yorick-yeti-fftw (6.3.2-1+b1 [hurd-i386], 6.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.3.1-1 [hppa, powerpcspe], 6.2.2-2 [m68k])

FFT plugin for the Yorick language

yorick-yeti-gsl (6.3.2-1+b1 [hurd-i386], 6.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.3.1-1 [hppa, powerpcspe], 6.2.2-2 [m68k])

GSL special functions plugin for the Yorick language

yorick-yeti-regex (6.3.2-1+b1 [hurd-i386], 6.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.3.1-1 [hppa, powerpcspe], 6.2.2-2 [m68k])

POSIX regular expressions for the Yorick language

yorick-yeti-tiff (6.3.2-1+b1 [hurd-i386], 6.3.2-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 6.3.1-1 [hppa, powerpcspe], 6.2.2-2 [m68k])

TIFF image format input for the Yorick language

yorick-yutils (1.5.0-1)

various utilities for the Yorick language

yorick-z (1.2.0+cvs20080115-3+b1 [hurd-i386], 1.2.0+cvs20080115-3 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 1.2.0+cvs20080115-2 [ia64], 1.2.0+cvs20080115-1 [hppa, m68k, powerpcspe])

zlib, jpeg and png support for the Yorick language

z88 (13.0.0+dfsg2-3+b1 [hurd-i386], 13.0.0+dfsg2-3 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 13.0.0+dfsg2-1 [hppa, m68k, powerpcspe])

Finite Element Analysis Program - runtime

z88-data (13.0.0+dfsg2-3)

Finite Element Analysis Program - data

zimpl (3.2.0+dfsg-1+b1 [hurd-i386], 3.2.0+dfsg-1 [alpha, amd64, armel, armhf, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, s390x, sh4, sparc, sparc64], 3.1.0+dfsg-1+b1 [powerpcspe], 3.1.0+dfsg-1 [hppa], 3.0.0+dfsg1-4 [avr32], 2.09.ds1-1 [m68k])

mathematical modeling language for optimization problems

ztex-bmp (20110912-1)

universal macro processor