Package: hmmer (3.0-4 and others)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)
Eric Talevich (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::searching, works-with-format::plaintext, Works with: Databases

Other Packages Related to hmmer

depends

recommends

suggests

dep: libc0.1 (>= 2.4) [kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.13-31) [hurd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.11) [hppa, powerpcspe]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.13) [s390x, sh4]

dep: libc6 (>= 2.4) [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390, sparc64]

dep: libc6 (>= 2.5-5) [m68k]

dep: libc6 (>= 2.6) [sparc]
dep: libc6.1 (>= 2.3.4) [ia64]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

GCC support library
dep: libpvm3 [m68k]

Parallel Virtual Machine - shared libraries

rec: biosquid

utilities for biological sequence analysis

sug: hmmer-doc (>= 2.3.2-5) [m68k]

profile hidden Markov models for protein sequence analysis (docs)

sug: hmmer-doc (>= 3.0-3) [hppa, powerpcspe]

sug: hmmer-doc (>= 3.0-4) [not hppa, m68k, powerpcspe]
sug: hmmer-pvm (>= 2.3.2-5) [m68k]

HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.0-4	2,245.7 kB	5,325.0 kB	[list of files]
amd64	3.0-4	2,165.0 kB	4,615.0 kB	[list of files]
armel	3.0-4	1,886.7 kB	3,876.0 kB	[list of files]
armhf	3.0-4	1,657.2 kB	2,652.0 kB	[list of files]
hppa	3.0-3	2,061.7 kB	4,172.0 kB	[list of files]
hurd-i386	3.0-4+b1	2,231.8 kB	4,822.0 kB	[list of files]
i386	3.0-4	2,165.5 kB	4,748.0 kB	[list of files]
ia64	3.0-4	3,087.4 kB	9,014.0 kB	[list of files]
kfreebsd-amd64	3.0-4	2,165.2 kB	4,584.0 kB	[list of files]
kfreebsd-i386	3.0-4	2,165.4 kB	4,716.0 kB	[list of files]
m68k (unofficial port)	2.3.2-5	905.1 kB	2,080.0 kB	[list of files]
mips	3.0-4	1,893.1 kB	4,431.0 kB	[list of files]
mipsel	3.0-4	1,913.6 kB	4,447.0 kB	[list of files]
powerpc	3.0-4	1,921.7 kB	4,116.0 kB	[list of files]
powerpcspe (unofficial port)	3.0-3	2,027.9 kB	4,380.0 kB	[list of files]
s390	3.0-4	1,969.2 kB	4,198.0 kB	[list of files]
s390x	3.0-4	2,041.0 kB	4,633.0 kB	[list of files]
sh4 (unofficial port)	3.0-4	2,041.4 kB	3,854.0 kB	[list of files]
sparc	3.0-4	1,801.8 kB	3,899.0 kB	[list of files]
sparc64 (unofficial port)	3.0-4	1,806.4 kB	3,897.0 kB	[list of files]