Package: dialign-tx (1.0.2-2 and others)

[ Source: dialign-t  ]

Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, role::program, Scope: Utility, Purpose: Comparing, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to dialign-tx

• dep: dialign-tx-data (= 1.0.2-1) [avr32, m68k]

  Common data files for dialign-tx

  dep: dialign-tx-data (= 1.0.2-2) [not avr32, m68k]

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc0.3 (>= 2.7) [hurd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.3-udeb

• dep: libc6 (>= 2.11) [hppa, powerpcspe, sh4]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13) [s390x]

  dep: libc6 (>= 2.5) [avr32]

  dep: libc6 (>= 2.5-5) [m68k]

  dep: libc6 (>= 2.7) [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390, sparc, sparc64]

• dep: libc6.1 (>= 2.7) [alpha, ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

Download dialign-tx

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha	1.0.2-2	70.9 kB	196.0 kB	[list of files]
amd64	1.0.2-2	57.6 kB	164.0 kB	[list of files]
armel	1.0.2-2	58.5 kB	160.0 kB	[list of files]
armhf	1.0.2-2	47.2 kB	108.0 kB	[list of files]
avr32 (unofficial port)	1.0.2-1	61.5 kB	160.0 kB	[list of files]
hppa	1.0.2-2	60.4 kB	160.0 kB	[list of files]
hurd-i386	1.0.2-2+b1	52.7 kB	135.0 kB	[list of files]
i386	1.0.2-2	51.9 kB	152.0 kB	[list of files]
ia64	1.0.2-2	85.6 kB	296.0 kB	[list of files]
kfreebsd-amd64	1.0.2-2	57.8 kB	134.0 kB	[list of files]
kfreebsd-i386	1.0.2-2	51.8 kB	122.0 kB	[list of files]
m68k (unofficial port)	1.0.2-1	44.2 kB	148.0 kB	[list of files]
mips	1.0.2-2	61.0 kB	184.0 kB	[list of files]
mipsel	1.0.2-2	61.5 kB	184.0 kB	[list of files]
powerpc	1.0.2-2	60.4 kB	164.0 kB	[list of files]
powerpcspe (unofficial port)	1.0.2-2	72.3 kB	184.0 kB	[list of files]
s390	1.0.2-2	56.5 kB	160.0 kB	[list of files]
s390x	1.0.2-2	57.3 kB	153.0 kB	[list of files]
sh4 (unofficial port)	1.0.2-2	60.3 kB	156.0 kB	[list of files]
sparc	1.0.2-2	57.4 kB	164.0 kB	[list of files]
sparc64 (unofficial port)	1.0.2-2	60.8 kB	168.0 kB	[list of files]