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[ Source: concavity  ]

Package: concavity (0.1+dfsg.1-5 and others)

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predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

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Download concavity

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.1+dfsg.1-5 237.3 kB1,051.0 kB [list of files]
amd64 0.1+dfsg.1-5 238.5 kB973.0 kB [list of files]
arm64 0.1+dfsg.1-5 224.0 kB941.0 kB [list of files]
armel 0.1+dfsg.1-5 224.9 kB933.0 kB [list of files]
armhf 0.1+dfsg.1-5 222.9 kB809.0 kB [list of files]
hppa (unofficial port) 0.1+dfsg.1-5 236.6 kB981.0 kB [list of files]
i386 0.1+dfsg.1-5 252.5 kB1,020.0 kB [list of files]
ia64 (unofficial port) 0.1+dfsg.1-5 266.8 kB1,406.0 kB [list of files]
m68k (unofficial port) 0.1+dfsg.1-5 235.2 kB976.0 kB [list of files]
mips64el 0.1+dfsg.1-5 252.7 kB1,168.0 kB [list of files]
ppc64 (unofficial port) 0.1+dfsg.1-5 252.3 kB1,194.0 kB [list of files]
ppc64el 0.1+dfsg.1-5 252.8 kB1,130.0 kB [list of files]
riscv64 0.1+dfsg.1-5+b1 242.3 kB885.0 kB [list of files]
s390x 0.1+dfsg.1-5 224.1 kB969.0 kB [list of files]
sh4 (unofficial port) 0.1+dfsg.1-5 273.7 kB1,001.0 kB [list of files]
sparc64 (unofficial port) 0.1+dfsg.1-5 218.0 kB971.0 kB [list of files]
x32 (unofficial port) 0.1+dfsg.1-5 238.1 kB948.0 kB [list of files]