[  etch  ] [  etch-m68k  ] [  lenny  ] [  squeeze  ] [  sid  ]
[ Source: boxshade  ]

Package: boxshade (3.3.1-4)

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

Other Packages Related to boxshade

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • sug: kalign
    Global and progressive multiple sequence alignment
    or clustalw
    global multiple nucleotide or peptide sequence alignment
    or mafft
    Multiple alignment program for amino acid or nucleotide sequences
    or hmmer
    profile hidden Markov models for protein sequence analysis
  • sug: seaview
    Multiplatform interface for sequence alignment and phylogeny
  • sug: texlive-latex-extra
    TeX Live: LaTeX supplementary packages
  • sug: xfig
    Facility for Interactive Generation of figures under X11

Download boxshade

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 55.0 kB268 kB [list of files]
amd64 51.8 kB244 kB [list of files]
armel 52.7 kB244 kB [list of files]
avr32 (unofficial port) 50.6 kB244 kB [list of files]
hppa 53.7 kB252 kB [list of files]
hurd-i386 45.2 kB228 kB [list of files]
i386 45.8 kB172 kB [list of files]
ia64 66.7 kB336 kB [list of files]
kfreebsd-amd64 51.8 kB170 kB [list of files]
kfreebsd-i386 45.3 kB158 kB [list of files]
m68k (unofficial port) 42.4 kB228 kB [list of files]
mips 52.3 kB280 kB [list of files]
mipsel 52.4 kB280 kB [list of files]
powerpc 51.1 kB248 kB [list of files]
s390 53.0 kB248 kB [list of files]
sparc 49.2 kB240 kB [list of files]