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[ Source: amap-align  ]

Package: amap-align (2.2-1)

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
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    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
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    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
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    dep: libc6 (>= 2.5-5) [m68k]
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  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
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  • dep: libgcc1 (>= 1:4.1.1-21) [not armel, avr32, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [avr32, hurd-i386]
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 1:4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
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  • dep: libgcc4 (>= 4.1.1-21) [hppa]
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  • dep: libstdc++6 (>= 4.2.1) [avr32, hurd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1-4) [not armel, avr32, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.3) [armel]
    dep: libstdc++6 (>= 4.4) [kfreebsd-amd64, kfreebsd-i386]
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Download amap-align

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 162.6 kB356 kB [list of files]
amd64 135.6 kB324 kB [list of files]
armel 130.7 kB304 kB [list of files]
avr32 (unofficial port) 144.9 kB284 kB [list of files]
hppa 157.9 kB328 kB [list of files]
hurd-i386 122.8 kB300 kB [list of files]
i386 124.4 kB256 kB [list of files]
ia64 222.6 kB568 kB [list of files]
kfreebsd-amd64 142.6 kB336 kB [list of files]
kfreebsd-i386 122.9 kB288 kB [list of files]
m68k (unofficial port) 112.3 kB296 kB [list of files]
mips 155.7 kB384 kB [list of files]
mipsel 156.4 kB384 kB [list of files]
powerpc 149.5 kB316 kB [list of files]
s390 125.1 kB304 kB [list of files]
sparc 131.5 kB316 kB [list of files]