Package: amap-align (2.2+git20080214.600fc29+dfsg-2 and others)

[ Source: amap-align  ]

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The Java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to amap-align

• dep: libc6 (>= 2.27) [not alpha, ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.27) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [armel, armhf, s390x]

  dep: libstdc++6 (>= 9) [not armel, armhf, riscv64, s390x]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download amap-align

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.2+git20080214.600fc29+dfsg-2	137.7 kB	1,223.0 kB	[list of files]
amd64	2.2+git20080214.600fc29+dfsg-2	129.2 kB	1,214.0 kB	[list of files]
arm64	2.2+git20080214.600fc29+dfsg-2	121.6 kB	1,182.0 kB	[list of files]
armel	2.2+git20080214.600fc29+dfsg-2	106.8 kB	1,174.0 kB	[list of files]
armhf	2.2+git20080214.600fc29+dfsg-2	107.2 kB	1,118.0 kB	[list of files]
hppa (unofficial port)	2.2+git20080214.600fc29+dfsg-2	128.0 kB	1,191.0 kB	[list of files]
i386	2.2+git20080214.600fc29+dfsg-2	112.0 kB	1,186.0 kB	[list of files]
ia64 (unofficial port)	2.2+git20080214.600fc29+dfsg-2	190.0 kB	1,454.0 kB	[list of files]
m68k (unofficial port)	2.2+git20080214.600fc29+dfsg-2	106.8 kB	1,190.0 kB	[list of files]
mips64el	2.2+git20080214.600fc29+dfsg-2	128.3 kB	1,216.0 kB	[list of files]
ppc64 (unofficial port)	2.2+git20080214.600fc29+dfsg-2	130.9 kB	1,230.0 kB	[list of files]
ppc64el	2.2+git20080214.600fc29+dfsg-2	140.3 kB	1,230.0 kB	[list of files]
riscv64	2.2+git20080214.600fc29+dfsg-2+b1	134.2 kB	1,156.0 kB	[list of files]
s390x	2.2+git20080214.600fc29+dfsg-2	109.2 kB	1,202.0 kB	[list of files]
sh4 (unofficial port)	2.2+git20080214.600fc29+dfsg-2	131.7 kB	1,154.0 kB	[list of files]
sparc64 (unofficial port)	2.2+git20080214.600fc29+dfsg-2	116.8 kB	1,193.0 kB	[list of files]
x32 (unofficial port)	2.2+git20080214.600fc29+dfsg-2	131.0 kB	1,210.0 kB	[list of files]