Package: bowtie2-examples (2.0.0-beta6-3)
Links for bowtie2-examples
Download Source Package bowtie2:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Alexandre Mestiashvili (QA Page)
- Andreas Tille (QA Page)
- Homepage [bowtie-bio.sourceforge.net]
Examples for bowtie2,
an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
This package provides some example data to work with bowtie2.
Other Packages Related to bowtie2-examples
- rec: bowtie2
- ultrafast memory-efficient short read aligner