Пакет: sibsim4 (0.17-1)

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Теги: Область: Биология, Биоинформатика, Реализовано на: C, Пользовательский интерфейс: Командная строка, Роль: Программа, Область: Утилита, Цель: Сравнение, Поиск, Поддерживаемые форматы: Простой текст