Pakket: sibsim4 (0.20-1)

[ Bron: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Andere aan sibsim4 gerelateerde pakketten

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.3) [amd64, i386, mips, mipsel]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6.1-udeb

sibsim4 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	34,0 kB	108,0 kB	[overzicht]
armel	34,0 kB	104,0 kB	[overzicht]
armhf	30,2 kB	79,0 kB	[overzicht]
i386	32,1 kB	96,0 kB	[overzicht]
ia64	49,6 kB	156,0 kB	[overzicht]
kfreebsd-amd64	34,0 kB	82,0 kB	[overzicht]
kfreebsd-i386	32,0 kB	74,0 kB	[overzicht]
mips	35,2 kB	116,0 kB	[overzicht]
mipsel	35,5 kB	112,0 kB	[overzicht]
powerpc	34,5 kB	108,0 kB	[overzicht]
s390	34,6 kB	108,0 kB	[overzicht]
s390x	37,0 kB	104,0 kB	[overzicht]
sparc	32,2 kB	104,0 kB	[overzicht]