Package: maq (0.7.1-5)

[ Source: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Perl, User Interface: interface::commandline, role::program, Scope: Utility, Purpose: Need an extra tag, use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to maq

• dep: libc0.1 (>= 2.4) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13-28) [armhf]

  dep: libc6 (>= 2.3.4) [mips, mipsel]

  dep: libc6 (>= 2.4) [amd64, armel, i386, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3.4) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.1.1) [not armel, armhf, mips, mipsel, powerpc, s390]

  GCC support bibliotheek

  dep: libgcc1 (>= 1:4.2.1) [mips, mipsel, powerpc, s390]

  dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

• dep: libstdc++6 (>= 4.1.1)

  GNU Standard C++ Library v3

• dep: libunwind7 [ia64]

  Een bibliotheek om de aanroep-ketting van een programma te bepalen - runtime

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM and BAM formats

Download maq

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	313.9 kB	559.0 kB	[list of files]
armel	330.9 kB	578.0 kB	[list of files]
armhf	324.7 kB	522.0 kB	[list of files]
i386	322.2 kB	594.0 kB	[list of files]
ia64	386.3 kB	806.0 kB	[list of files]
kfreebsd-amd64	312.2 kB	514.0 kB	[list of files]
kfreebsd-i386	319.1 kB	549.0 kB	[list of files]
mips	336.5 kB	603.0 kB	[list of files]
mipsel	338.5 kB	603.0 kB	[list of files]
powerpc	345.4 kB	590.0 kB	[list of files]
s390	328.4 kB	578.0 kB	[list of files]
s390x	327.2 kB	595.0 kB	[list of files]
sparc	343.8 kB	599.0 kB	[list of files]