Pakket: clustalw (2.1+lgpl-2)

[ Bron: clustalw  ]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, User Interface: Text-based Interactive, Role: role::program, scope::utility, Purpose: Comparing, Supports Format: works-with-format::plaintext, works-with::TODO

Andere aan clustalw gerelateerde pakketten

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc0.1-udeb

• dep: libc6 (>= 2.1.3) [i386]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.13) [s390x]

  dep: libc6 (>= 2.2) [mips, mipsel]

  dep: libc6 (>= 2.2.5) [amd64]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.2) [ia64]

  Embedded GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc1 [kfreebsd-amd64, kfreebsd-i386]

  GCC support bibliotheek

  dep: libgcc1 (>= 1:4.1.1) [niet armel, armhf, kfreebsd-amd64, kfreebsd-i386]

  dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

• dep: libstdc++6 [kfreebsd-amd64, kfreebsd-i386]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.4.0) [niet kfreebsd-amd64, kfreebsd-i386]

• dep: libunwind7 [ia64]

  Een bibliotheek om de aanroep-ketting van een programma te bepalen - runtime

• sug: clustalx

  Multiple alignment of nucleic acid and protein sequences (graphical interface)

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

clustalw downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	337,8 kB	860,0 kB	[overzicht]
armel	318,1 kB	772,0 kB	[overzicht]
armhf	299,2 kB	566,0 kB	[overzicht]
i386	326,7 kB	844,0 kB	[overzicht]
ia64	484,5 kB	1.728,0 kB	[overzicht]
kfreebsd-amd64	337,8 kB	832,0 kB	[overzicht]
kfreebsd-i386	326,2 kB	816,0 kB	[overzicht]
mips	342,7 kB	1.092,0 kB	[overzicht]
mipsel	342,4 kB	1.092,0 kB	[overzicht]
powerpc	348,8 kB	876,0 kB	[overzicht]
s390	324,5 kB	828,0 kB	[overzicht]
s390x	366,0 kB	875,0 kB	[overzicht]
sparc	328,3 kB	852,0 kB	[overzicht]