Package: rnahybrid (2.1-2)

[ Source: rnahybrid  ]

Fast and effective prediction of microRNA/target duplexes

RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

Public research assisted by RNAhybrid should cite: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich Fast and effective prediction of microRNA/target duplexes RNA, 10:1507-1517, 2004.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing

Other Packages Related to rnahybrid

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.2) [i386, mips, mipsel]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.2.5) [amd64]

  dep: libc6 (>= 2.4) [armel, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.2) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

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Architecture	Package Size	Installed Size	Files
amd64	254.5 kB	588.0 kB	[list of files]
armel	573.0 kB	1,236.0 kB	[list of files]
i386	239.9 kB	624.0 kB	[list of files]
ia64	469.9 kB	1,460.0 kB	[list of files]
kfreebsd-amd64	254.6 kB	572.0 kB	[list of files]
kfreebsd-i386	239.7 kB	560.0 kB	[list of files]
mips	345.5 kB	692.0 kB	[list of files]
mipsel	337.9 kB	692.0 kB	[list of files]
powerpc	217.7 kB	444.0 kB	[list of files]
s390	203.2 kB	516.0 kB	[list of files]
sparc	275.0 kB	768.0 kB	[list of files]