Pakket: samtools (1.19.2-1 en anderen)

[ Bron: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andere aan samtools gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf, hppa, i386, m68k, sh4]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, i386, m68k, sh4]

• sug: cwltool

  Common Workflow Language reference implementation

samtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.19.2-1+b1	626,8 kB	1.800,0 kB	[overzicht]
amd64	1.19.2-1+b1	630,1 kB	1.393,0 kB	[overzicht]
arm64	1.19.2-1+b1	602,6 kB	1.669,0 kB	[overzicht]
armel	1.19.2-1+b1	596,5 kB	1.318,0 kB	[overzicht]
armhf	1.19.2-1+b1	599,6 kB	1.134,0 kB	[overzicht]
hppa (unofficial port)	1.19.2-1+b1	627,8 kB	1.355,0 kB	[overzicht]
i386	1.19.2-1+b1	665,6 kB	1.518,0 kB	[overzicht]
ia64 (unofficial port)	1.19.2-1+b1	716,1 kB	2.112,0 kB	[overzicht]
m68k (unofficial port)	1.19.2-1+b1	607,6 kB	1.342,0 kB	[overzicht]
mips64el	1.19.2-1+b1	609,1 kB	1.819,0 kB	[overzicht]
ppc64 (unofficial port)	1.19.2-1+b1	647,0 kB	1.925,0 kB	[overzicht]
ppc64el	1.19.2-1+b1	656,9 kB	1.925,0 kB	[overzicht]
riscv64	1.19.2-1+b1	640,5 kB	1.265,0 kB	[overzicht]
s390x	1.19.2-1+b1	637,7 kB	1.469,0 kB	[overzicht]
sh4 (unofficial port)	1.19.2-1+b1	687,0 kB	1.600,0 kB	[overzicht]
sparc64 (unofficial port)	1.19.2-1+b1	596,4 kB	7.761,0 kB	[overzicht]
x32 (unofficial port)	1.19.2-1+b1	635,4 kB	1.358,0 kB	[overzicht]