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[ Bron: epcr  ]

Pakket: ncbi-epcr (2.3.10-1 en anderen)

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

Tags: Field: Biology, Role: Program, Scope: Utility

Andere aan ncbi-epcr gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.1-udeb
  • dep: libc0.3 (>= 2.3.5-1) [hurd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.7-1) [niet alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-12) [hurd-i386]
    GCC support bibliotheek
    dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, ia64]
    dep: libgcc1 (>= 1:4.2.1-4) [mips, mipsel, powerpc, s390, sparc]
    dep: libgcc1 (>= 1:4.3) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    GCC support bibliotheek
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support bibliotheek
  • dep: libstdc++6 (>= 4.1.1-12) [hurd-i386]
    De GNU stdc++ bibliotheek versie 3
    dep: libstdc++6 (>= 4.2.1-4) [niet armel, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.3) [armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    Een bibliotheek om de aanroep-ketting van een programma te bepalen - runtime
  • rec: bioperl
    Perl tools for computational molecular biology
  • rec: ncbi-epcr-data
    Pakket niet beschikbaar
  • sug: bioperl
    Perl tools for computational molecular biology

ncbi-epcr downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 2.3.10-1 211,0 kB640 kB [overzicht]
amd64 2.3.10-1 195,2 kB520 kB [overzicht]
arm 2.3.10-1 219,1 kB548 kB [overzicht]
armel 2.3.10-1 183,8 kB472 kB [overzicht]
hppa 2.3.10-1 231,9 kB584 kB [overzicht]
hurd-i386 1.2.0-3 14,4 kB76 kB [overzicht]
i386 2.3.10-1 188,5 kB476 kB [overzicht]
ia64 2.3.10-1 268,8 kB892 kB [overzicht]
kfreebsd-amd64 (unofficial port) 2.3.10-1 196,4 kB464 kB [overzicht]
kfreebsd-i386 (unofficial port) 2.3.10-1 191,8 kB432 kB [overzicht]
m68k 2.3.10-1 177,9 kB484 kB [overzicht]
mips 2.3.10-1 209,7 kB692 kB [overzicht]
mipsel 2.3.10-1 209,8 kB692 kB [overzicht]
powerpc 2.3.10-1 204,6 kB544 kB [overzicht]
s390 2.3.10-1 192,1 kB504 kB [overzicht]
sparc 2.3.10-1 196,9 kB528 kB [overzicht]