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Pakket: exonerate (2.0.0-1 en anderen)

generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

Andere aan exonerate gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.1-udeb
  • dep: libc0.3 (>= 2.6.1-1) [hurd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.6.1-1) [arm]
    dep: libc6 (>= 2.7-1) [niet alpha, arm, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb
  • dep: libgcc1 (>= 1:4.3) [armel]
    GCC support bibliotheek
  • dep: libglib1.2ldbl (>= 1.2.10-18) [arm, hurd-i386, m68k]
    The GLib library of C routines
  • dep: libglib2.0-0 (>= 2.12.0) [niet arm, hurd-i386, m68k]
    The GLib library of C routines
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

exonerate downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 2.0.0-1 3.393,7 kB9736 kB [overzicht]
amd64 2.0.0-1 3.250,0 kB9172 kB [overzicht]
arm 1.4.0-1 2.948,6 kB8032 kB [overzicht]
armel 2.0.0-1 3.516,6 kB9268 kB [overzicht]
hppa 2.0.0-1 3.301,5 kB8692 kB [overzicht]
hurd-i386 1.4.0-1 2.484,2 kB7532 kB [overzicht]
i386 2.0.0-1 3.086,5 kB8656 kB [overzicht]
ia64 2.0.0-1 4.917,0 kB21040 kB [overzicht]
kfreebsd-amd64 (unofficial port) 2.0.0-1 3.249,3 kB9028 kB [overzicht]
kfreebsd-i386 (unofficial port) 2.0.0-1 2.890,9 kB8682 kB [overzicht]
m68k 1.4.0-1 1.948,1 kB6448 kB [overzicht]
mips 2.0.0-1 3.452,4 kB10828 kB [overzicht]
mipsel 2.0.0-1 3.452,6 kB10828 kB [overzicht]
powerpc 2.0.0-1 3.123,8 kB9024 kB [overzicht]
s390 2.0.0-1 3.366,4 kB8908 kB [overzicht]
sparc 2.0.0-1 2.975,0 kB8736 kB [overzicht]