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Pakket: dialign-tx (1.0.2-1)

Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Tags: Field: Biology, Bioinformatics, Implemented in: C, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Andere aan dialign-tx gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: dialign-tx-data (= 1.0.2-1)
    Common data files for dialign-tx
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [niet alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb

dialign-tx downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 65,0 kB192 kB [overzicht]
amd64 56,4 kB164 kB [overzicht]
armel 57,7 kB160 kB [overzicht]
avr32 (unofficial port) 61,5 kB160 kB [overzicht]
hppa 59,2 kB156 kB [overzicht]
hurd-i386 50,8 kB152 kB [overzicht]
i386 51,4 kB152 kB [overzicht]
ia64 82,7 kB288 kB [overzicht]
kfreebsd-amd64 56,4 kB134 kB [overzicht]
kfreebsd-i386 51,3 kB122 kB [overzicht]
m68k (unofficial port) 44,2 kB148 kB [overzicht]
mips 57,5 kB184 kB [overzicht]
mipsel 57,7 kB184 kB [overzicht]
powerpc 59,3 kB164 kB [overzicht]
s390 55,3 kB156 kB [overzicht]
sparc 55,5 kB164 kB [overzicht]