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[ Bron: sigma-align  ]

Pakket: sigma-align (1.1.1-3)

Simple greedy multiple alignment of non-coding DNA sequences

Sigma ("Simple greedy multiple alignment") is an alignment program with a new algorithm and scoring scheme designed specifically for non-coding DNA sequence. It uses a strategy of seeking the best possible gapless local alignments, at each step making the best possible alignment consistent with existing alignments, and scores the significance of the alignment based on the lengths of the aligned fragments and a background model which may be supplied or estimated from an auxiliary file of intergenic DNA.

Sigma has been published in BMC Bioinformatics. 2006 Mar 16;7:143.

Tags: Field: Biology, Implemented in: OCaml, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Andere aan sigma-align gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [niet alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb
  • dep: libglib2.0-0 (>= 2.12.0)
    The GLib library of C routines

sigma-align downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 24,6 kB112 kB [overzicht]
amd64 22,7 kB108 kB [overzicht]
arm 21,3 kB100 kB [overzicht]
armel 23,8 kB108 kB [overzicht]
hppa 23,7 kB108 kB [overzicht]
i386 21,0 kB100 kB [overzicht]
ia64 30,3 kB136 kB [overzicht]
mips 23,4 kB112 kB [overzicht]
mipsel 23,7 kB112 kB [overzicht]
powerpc 25,1 kB112 kB [overzicht]
s390 22,3 kB104 kB [overzicht]
sparc 21,3 kB104 kB [overzicht]