Pakket: sibsim4 (0.17-1)

[ Bron: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Searching, Supports Format: Plain Text

Andere aan sibsim4 gerelateerde pakketten

• dep: libc6 (>= 2.7-1) [niet alpha, ia64]

  GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6.1-udeb

sibsim4 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha	37,2 kB	116,0 kB	[overzicht]
amd64	32,0 kB	104,0 kB	[overzicht]
arm	31,0 kB	96,0 kB	[overzicht]
armel	32,9 kB	104,0 kB	[overzicht]
hppa	33,6 kB	104,0 kB	[overzicht]
i386	30,4 kB	96,0 kB	[overzicht]
ia64	47,3 kB	152,0 kB	[overzicht]
mips	34,2 kB	112,0 kB	[overzicht]
mipsel	34,2 kB	112,0 kB	[overzicht]
powerpc	33,9 kB	108,0 kB	[overzicht]
s390	33,7 kB	104,0 kB	[overzicht]
sparc	31,2 kB	104,0 kB	[overzicht]