Pakket: molphy (2.3b3-5) [non-free]

[ Bron: molphy  ]

Program Package for MOLecular PHYlogenetics

ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language)

 NucML:  Maximum Likelihood Inference of Nucleic Acid Phylogeny
 ProtST: Basic Statistics of Protein Sequences
 NucST:  Basic Statistics of Nucleic Acid Sequences
 NJdist: Neighbor Joining Phylogeny from Distance Matrix

Utilities (Perl)

 mollist:  get identifiers list        molrev:   reverse DNA sequences
 molcat:   concatenate sequences       molcut:   get partial sequences
 molmerge: merge sequences             nuc2ptn:  DNA -> Amino acid
 rminsdel: remove INS/DEL sites        molcodon: get specified codon sites
 molinfo:  get varied sites            mol2mol:  MOLPHY format beautifer
 inl2mol:  Interleaved -> MOLPHY       mol2inl:  MOLPHY -> Interleaved
 mol2phy:  MOLPHY -> Sequential        phy2mol:  Sequential -> MOLPHY
 must2mol: MUST -> MOLPHY              etc.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing

Andere aan molphy gerelateerde pakketten

• dep: libc6 (>= 2.7-1) [niet alpha, ia64]

  GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: perl

  Larry Wall's Practische Extractie en Reportage Taal

• sug: phylip

  [Biology] A package of programs for inferring phylogenies

molphy downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha	298,1 kB	960,0 kB	[overzicht]
amd64	276,1 kB	876,0 kB	[overzicht]
arm	267,0 kB	832,0 kB	[overzicht]
armel	307,2 kB	912,0 kB	[overzicht]
hppa	291,2 kB	872,0 kB	[overzicht]
i386	236,0 kB	816,0 kB	[overzicht]
ia64	410,4 kB	1.432,0 kB	[overzicht]
mips	310,4 kB	1.024,0 kB	[overzicht]
mipsel	311,2 kB	984,0 kB	[overzicht]
powerpc	299,7 kB	908,0 kB	[overzicht]
s390	268,2 kB	856,0 kB	[overzicht]
sparc	268,5 kB	840,0 kB	[overzicht]